rs235163993 SNP Detail

Summary

• ID
  rs235163993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119230761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAATGGA GGGATCTGGT
  GTGTGTGCGT GTGTGAAAGG AACAGAGGCA TGTTCTGAAC AGATCTTTAG AGGTGGGAGG
  AGTGCTGAAG GTAAGATGAA GGATGCTGGA TTGCTGAGGA TCCTTCAGAA AGCAGGTCGC
  CAACAGTTCT TTCCCACCTG CAGCTGCTCT GTGGGTCCTC CTCTGCTTGG AGATAACTGT
  R
  CGTGCGTTGT GAGGAACTGC TGTCAATTCA GACTTCAGCG TTTTCCTGCC AATTAATTAG
  CCCATAAATG GGAGCTGGAG GGCAGAGGTC CTAGGTTATG GGGACCAGGA GCTACCCACT
  CACTCAGGGG TCCCAGAGGA GCGTGCATCC CGTAGCGTGG GCTCCATAGC ACGGGGCAGG
  AAAGCACCAG CCAAGTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379136852	MGP_WTSI_9_119310813	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235163993					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379136852	MGP_WTSI_9_119310813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119230761 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	423 bp upstream
Cpgi22474	CpG island 22474	within coordinates
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	227 bp upstream
Rr688480	regulatory region 688480	238 bp distal
Rr688481	regulatory region 688481	within coordinates
Rr688482	regulatory region 688482	268 bp proximal
Rr688483	regulatory region 688483	760 bp proximal
Rr688484	regulatory region 688484	825 bp proximal
Rr688485	regulatory region 688485	985 bp proximal
Tssr87682	transcription start site region 87682	386 bp upstream
Tssr87683	transcription start site region 87683	461 bp upstream
Tssr87684	transcription start site region 87684	531 bp upstream
Tssr91983	transcription start site region 91983	1780 bp downstream