rs235166178 SNP Detail

Summary

• ID
  rs235166178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110679275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCATGTCA CTGAGTTACA CACTAAACCA
  ACAATGGAAA TGCCATCACT TCCAACTTGT AGGTTGTAAA CAAATAAACC TTGCTGTCAA
  ATACCAGTAG GCTATACTTC TGTTTAAGAT TCTTTAAAAT ATTGTTGATA TTTGAATCCA
  Y
  TACAATGTAA TGGATGCCTA GTGAATCTTG CCAAAATCAT GCCTGAATTT TTCAATTCAC
  ATACTAGAAT ATAGTTCACC ACCACTTCCC TCAGAACAGA CTTTGGCACT TACCCTCTTA
  CTTTCCTGAA GATTGCATCA TGTCGTTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401264	CHEV_7_118223582	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235166178					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110679275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	1903 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr166519	regulatory region 166519	74 bp distal
Rr166520	regulatory region 166520	125 bp proximal
Rr381309	regulatory region 381309	1032 bp upstream
Tssr2372	transcription start site region 2372	249 bp downstream
Tssr68538	transcription start site region 68538	107 bp upstream
Tssr74291	transcription start site region 74291	1929 bp upstream
Tssr74292	transcription start site region 74292	1513 bp upstream
Tssr74293	transcription start site region 74293	1500 bp upstream
Tssr74294	transcription start site region 74294	731 bp upstream
Tssr74295	transcription start site region 74295	221 bp downstream
Tssr74296	transcription start site region 74296	863 bp downstream
Tssr74297	transcription start site region 74297	1528 bp downstream
Tssr74298	transcription start site region 74298	1958 bp downstream