rs235169962 SNP Detail

Summary

• ID
  rs235169962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGACTC TGCTTTATCA
  CACAGGGCAC CCCAGTTCAA CCTGCACACT AGAAGCCAGG TGGGCCCCTG AGGGAGACAG
  CATAGAGCAA GAAGACAGCA GTCTCAGAGC AGGGAGCAGG ACCGGCTGGA CACTGATCCA
  GATGAGTGAA GCCCAGGCAT ACCCAGGGCA GGCATTCATT GGTTTTACCT AGGTATCTCC
  Y
  GGTCCCTCAC AGGGAACTGC GTCCTGTCAC AGAGGAGGAA AGCGGAAGTA TAAGGGGTAG
  TGCTTTTTAT TAGGGATGGA GAAACAGAAG TAGAACCTAG CACCTAGGCA CCTTAGTTTT
  TGCTGTTTGG GCCCCTGCTG AGCAGAGGAG AGCCAAGATA TTCAGTTGAG AGGCCAGATG
  CACAGACTGG AGGGGCGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246849	CHEV_4_106294458	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235169962					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	530 bp proximal
Rr596780	regulatory region 596780	89 bp proximal
Tssr38185	transcription start site region 38185	571 bp upstream
Tssr38186	transcription start site region 38186	633 bp upstream
Tssr38187	transcription start site region 38187	675 bp upstream
Ttc22	tetratricopeptide repeat domain 22	596 bp upstream