rs235173820 SNP Detail

Summary

• ID
  rs235173820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTCTTT CTGCTCTTGG
  TTTGGTCTAC TGGCACTGTC CCAGTCTAGA GAAAGCAACA CACCAAGTGG TCAAGATTGT
  TATTTCAGCT TTTTATATAT GTAAGCTAGC AGAAGGCCAG TTTGCCATGT TATGAATGAC
  TGCTGCTTTC GGAGGGAGTA AACCAGACAT TCTGCATCCA GATCATGCCC CTAAATTCTA
  Y
  AGGTTTTGGC TAGGGCTAGG AGGGCCTTAT TCATCAACAA TTGAGTAAAA GGGTGTCCAC
  ATGGCCCATT GTTCTTGGAG ATTGAACATC ACGTGGCTTG CTAGACATGT GATGGGGCTC
  ATTAAATGTT TATTTGGGGT ACCTTCCAAC CGCTAAAGAG GGATGAGGAC AAGGATTCTA
  AAATGAACTT TGTCCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651688	CHEV_3_9610806	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235173820					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	290 bp distal
Gm56803	predicted gene, 56803	1823 bp downstream
Rr69501	regulatory region 69501	66 bp distal
Rr73453	regulatory region 73453	735 bp proximal
Rr78141	regulatory region 78141	265 bp distal
Tssr28346	transcription start site region 28346	1982 bp downstream
Tssr28347	transcription start site region 28347	1965 bp downstream
Tssr32578	transcription start site region 32578	766 bp upstream
Tssr32579	transcription start site region 32579	720 bp upstream
Tssr32580	transcription start site region 32580	682 bp upstream
Tssr32581	transcription start site region 32581	559 bp upstream
Zfp704	zinc finger protein 704	721 bp upstream