rs235179335 SNP Detail

Summary

• ID
  rs235179335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8646852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCAAGG CAATCCCAAA
  ACTACCAAAA AAAAAAAAAA AAAAAGTTGT TTCAAGAAAC AAAACAGGCC GGGCGTGGTG
  GCGCACCGGA GGCAGAGGCA GGCGGATTTC TGAGTTCAAG GCCAGCCTGG TCTATCTACA
  AAGTGAGTTC CAGGACAGCC AGGGCTATAC AGAGAAACCC TGTCTCGAAA TACCAAAAAA
  R
  AAAAAAAAAA AAAAAAAAAA AAGAAGGAAA CAAAACAAAG AGCACCAGCA CACCTGGCTT
  TGAGCCTAGT CCTAAGGAAA ATGGAATATG AACTTTCAGA GAGTCCAGAG ATTAGGCTCT
  GGGAACCAGA CAGATCAGGG AGAAGTCCGG AGAAGCCAGA GCAGGCAGGA TCAGATCCTG
  CAGGACTTCC ATCCAGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	LEWES/EiJ	MOLF/EiJ	RIIIS/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
ss395343530	MGP_WTSI_16_8829081	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	LEWES/EiJ	MOLF/EiJ	RIIIS/J	SEA/GnJ	WSB/EiJ	ZALENDE/EiJ
rs235179335					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395343530	MGP_WTSI_16_8829081	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8646852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7943	CpG island 7943	121 bp proximal
Hapstr1	HUWE1 associated protein modifying stress responses	1112 bp upstream
Rr322186	regulatory region 322186	1052 bp distal
Rr325518	regulatory region 325518	within coordinates
Rr370042	regulatory region 370042	716 bp upstream
Tssr137006	transcription start site region 137006	1008 bp upstream
Tssr137007	transcription start site region 137007	1049 bp upstream
Tssr137008	transcription start site region 137008	1105 bp upstream
Tssr137009	transcription start site region 137009	1127 bp upstream