rs235187536 SNP Detail

Summary

• ID
  rs235187536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAAAAAGAA GAAGGTACCA
  R
  AAGTACTAAG AGAAAAATCT TTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385457	CHEV_17_39986056	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235187536					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160002 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	280 bp distal
Gm26917	predicted gene, 26917	323 bp downstream
Rn18s	18S ribosomal RNA	910 bp distal
Rn18s-rs5	18s RNA, related sequence 5	909 bp downstream
Tssr144610	transcription start site region 144610	1896 bp downstream
Tssr144611	transcription start site region 144611	1773 bp downstream
Tssr144612	transcription start site region 144612	1663 bp downstream
Tssr144613	transcription start site region 144613	1519 bp downstream
Tssr144614	transcription start site region 144614	1497 bp downstream
Tssr144615	transcription start site region 144615	1416 bp downstream
Tssr144616	transcription start site region 144616	1326 bp downstream
Tssr144617	transcription start site region 144617	1299 bp downstream
Tssr144618	transcription start site region 144618	1282 bp downstream
Tssr144619	transcription start site region 144619	1239 bp downstream
Tssr144620	transcription start site region 144620	1216 bp downstream
Tssr144621	transcription start site region 144621	1102 bp downstream
Tssr144622	transcription start site region 144622	1086 bp downstream
Tssr144623	transcription start site region 144623	1056 bp downstream
Tssr144624	transcription start site region 144624	921 bp downstream
Tssr144625	transcription start site region 144625	904 bp downstream
Tssr144626	transcription start site region 144626	875 bp downstream
Tssr144627	transcription start site region 144627	843 bp downstream
Tssr144628	transcription start site region 144628	684 bp downstream
Tssr144629	transcription start site region 144629	610 bp downstream
Tssr144630	transcription start site region 144630	601 bp downstream
Tssr144631	transcription start site region 144631	504 bp downstream
Tssr144632	transcription start site region 144632	394 bp downstream
Tssr144633	transcription start site region 144633	347 bp downstream
Tssr148065	transcription start site region 148065	1327 bp upstream
Tssr148066	transcription start site region 148066	1250 bp upstream
Tssr148067	transcription start site region 148067	1150 bp upstream
Tssr148068	transcription start site region 148068	1052 bp upstream
Tssr148069	transcription start site region 148069	869 bp upstream
Tssr148070	transcription start site region 148070	805 bp upstream
Tssr148071	transcription start site region 148071	779 bp upstream
Tssr148072	transcription start site region 148072	451 bp upstream