rs235189349 SNP Detail

Summary

• ID
  rs235189349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGCTTG GTCCCTGTGG
  ACCACATATG CCACTCTTAG ACAAAATGAA AGATAGTCAT CAAAATTAGA GAGGGCAGCT
  GCGATGACTC GGTCTTTCAT GTCTCCTCTG TCACCTTCTC CCCTGCTTCT TTTTATTTGT
  ATAGCACATG TCCTCCATTG GCTGTGATAT CTAATAGTGT CCAGTGACAC CGCTGAGCCC
  R
  GTAAGGTTAA GGGCAGAGTA CAGGTAAAAA CGTAACAACA AAAGACTATC TTCATATATC
  CAAAGCCAGG CATGGTAGTG TCTGCTTGCC ATTCCAGTCT TGGGAAGGCA GAGAGAGACA
  GGTAGATTAC ACTGTCAGCT TGGGCCTAAA TTGAAGCTCA GCCTAGAGCT ACAGAGGAGG
  GTCTTGCCTA AGGGAAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440050	MGP_WTSI_2_164569755	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235189349					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440050	MGP_WTSI_2_164569755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1322 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1760 bp upstream
Tssr21635	transcription start site region 21635	1724 bp upstream
Tssr21636	transcription start site region 21636	1773 bp upstream
Tssr27522	transcription start site region 27522	1147 bp upstream
Tssr27523	transcription start site region 27523	1131 bp upstream
Tssr27524	transcription start site region 27524	1108 bp upstream
Tssr27525	transcription start site region 27525	1074 bp upstream
Tssr27526	transcription start site region 27526	1044 bp upstream
Tssr27527	transcription start site region 27527	1641 bp downstream
Tssr27528	transcription start site region 27528	1661 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates