rs235189991 SNP Detail

Summary

• ID
  rs235189991
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122579529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCTTA AGAGCTGCTG
  GTTTCGCTTT TAGAGAAACT CGAACAGCTA GATCAGGCGG CAGGGGTTTG CATCAGGCGA
  GCAGGAGGCG GGGCTTTACC AGCAGTGCAG GACTCTCAGC TGCAGGCACA GTGCCAGTTT
  ATCAGTTTTT GTTGTTATTA TTATTGTTGT TGTTGTCCCG ATTCGGCCGC TTCCCCCCAC
  A
  CCCCCCCCCG AAAATCCTTG AGATGGGTAA ATACTAAGAG GTGAACAACC AGCAGATGAA
  CTTTGGCCCG TTTTTCCAGA TATAAAACAC AGAGCAACAT TCAAACTAAA TGAAACCACA
  GACACAGACT GACAGACATG GGCAATCCAG CATGCCCAGA ACCAGAAGCA AATGTTCCCT
  CAGTGGAAAC CAGTGAAAAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
ss369909442	MGP_WTSI_6_122552588	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	ZALENDE/EiJ
rs235189991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369909442	MGP_WTSI_6_122552588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122579529 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	126 bp upstream
Rr399899	regulatory region 399899	58 bp downstream
Rr399900	regulatory region 399900	1540 bp upstream
Tssr58686	transcription start site region 58686	101 bp upstream
Tssr62922	transcription start site region 62922	1720 bp upstream
Tssr62923	transcription start site region 62923	226 bp upstream
Tssr62924	transcription start site region 62924	170 bp upstream
Tssr62925	transcription start site region 62925	148 bp upstream
Tssr62926	transcription start site region 62926	513 bp downstream
Tssr62927	transcription start site region 62927	1806 bp downstream