rs235191133 SNP Detail

Summary

• ID
  rs235191133
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTAAAA AGAAAGAAAG
  AAAGAAAAAA ACACACCCGA AAACACCAAC CAAAGTGCTT AGTGAATCAG AATGGGTCAC
  TTATGGAGGC TAAGAGCAGC TGGGGCAGCA AGATCTGTCC CCGCGGTGCG CAAACCGCGG
  ACTCTGGGGC GATGGCGGCC GGGTCAGGCC ACCCCAGAGC GGCCAGGCGG GGCTGCTCAC
  S
  GGCAGCTGGC AGGGCGGCCG CGGCGGGAGG CCCCACGGGG GCGAGAGGCC CCGCGACGTC
  GGCACTGGGC GGGGGGAGGG TGGCAACACT GGGAGCGGGG AGCACGGGGG CAGGTGGTGG
  CGCTGCGGGG GGGGGGGCGG TGGCAGCGCG GGGGCGTCTG CGCGGCGGGC TCAGCCCGGG
  GGTCGCGGCG GGGAGCCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433255	MGP_WTSI_3_30993093	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235191133					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433255	MGP_WTSI_3_30993093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	170 bp downstream
Rr397631	regulatory region 397631	354 bp downstream
Rr574879	regulatory region 574879	264 bp distal
Rr574880	regulatory region 574880	106 bp proximal
Rr574881	regulatory region 574881	397 bp proximal
Rr574882	regulatory region 574882	965 bp proximal
Rr574883	regulatory region 574883	996 bp proximal
Rr574884	regulatory region 574884	1660 bp proximal
Skil	SKI-like	939 bp upstream
Tssr28706	transcription start site region 28706	264 bp downstream
Tssr28707	transcription start site region 28707	121 bp downstream
Tssr28708	transcription start site region 28708	495 bp upstream
Tssr28709	transcription start site region 28709	523 bp upstream
Tssr28710	transcription start site region 28710	548 bp upstream
Tssr28711	transcription start site region 28711	766 bp upstream
Tssr28712	transcription start site region 28712	790 bp upstream
Tssr28713	transcription start site region 28713	881 bp upstream
Tssr28714	transcription start site region 28714	1726 bp upstream
Tssr32911	transcription start site region 32911	1656 bp downstream