rs235193913 SNP Detail

Summary

• ID
  rs235193913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127124074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCCCAG TGTCTGGCCA
  CTGCTGTGCC CTCCCCCAGG AAGATCATAT AAAAAGTACA GATTGCCCCA CAGGTCACCA
  AGCAATTGCC CAACTGCCTG GCAGGGTAGT GCCAGCTGAA ATCCCCCCAT GCCCACTCCA
  TCCAACAATC TCGGATCTAA TTCATTTGGA CCTCCAAAGA GGCTGGAGCC AGAGCTCTGT
  Y
  TTCCTCCAGG ATCCTGAGAA CTCCTGGTCC TCTCAAGCCG ACGAAAAGGG GATTCATAAT
  CCCCCACTGG CTTCCAATTA ACAACAAGAA GCATTCCCTG ACATGTAGGG ACGGCCCTTA
  GACCTGCAAG TACCCCTCAC CAACCTCACC ATCGCTCCCG CCGCACACTG ACGGCTTCCA
  AACTTTCCCT CTCATAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182444	MGP_WTSI_10_126725261	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235193913					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182444	MGP_WTSI_10_126725261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127124074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	92 bp proximal
Gm4189	predicted gene 4189	1488 bp downstream
Gm20492	predicted gene 20492	280 bp upstream
Gm66222	predicted gene, 66222	1804 bp upstream
Mbd6	methyl-CpG binding domain protein 6	within coordinates
Rr402323	regulatory region 402323	882 bp upstream
Rr440861	regulatory region 440861	1829 bp distal
Rr440862	regulatory region 440862	1624 bp distal
Rr440863	regulatory region 440863	within coordinates
Rr440864	regulatory region 440864	291 bp proximal
Rr440865	regulatory region 440865	675 bp proximal
Rr440866	regulatory region 440866	1314 bp proximal
Tssr3392	transcription start site region 3392	705 bp upstream
Tssr96176	transcription start site region 96176	120 bp downstream
Tssr96177	transcription start site region 96177	285 bp upstream
Tssr96178	transcription start site region 96178	323 bp upstream
Tssr96179	transcription start site region 96179	1798 bp upstream
Tssr99753	transcription start site region 99753	1942 bp upstream
Tssr99754	transcription start site region 99754	1774 bp upstream
Tssr99755	transcription start site region 99755	210 bp downstream
Tssr99756	transcription start site region 99756	228 bp downstream
Tssr99757	transcription start site region 99757	405 bp downstream
Tssr99758	transcription start site region 99758	554 bp downstream
Tssr99759	transcription start site region 99759	614 bp downstream
Tssr99760	transcription start site region 99760	646 bp downstream
Tssr99761	transcription start site region 99761	760 bp downstream
Tssr99762	transcription start site region 99762	794 bp downstream
Tssr99763	transcription start site region 99763	851 bp downstream