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rs235194093 SNP Detail
Summary
  • ID
    rs235194093
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93351869 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGATCCGGG AACCCGACGA
GAGCATTACC CAGAGGTGGC AGTGGCAGCT CGAAAACGAG GCAGACGCCC GTCAGAACAA
GGTCTACTCT AGGCCTAGCA GGCAGGAGCA GAGGCTTCGC CAGGAGCTGG GGGAGCGTCA
GCTCCGGGAG CAGGAGGAGC AGCGCCGCGA CCTCCAACAG GAGCGTCCCG CTGAGGAGGC
K
CGCCAGCGCA ACCAGTGGGA GAGGCCGCAG CGGGCGGAGG AGCGCCTGGA GCAGGAGCAG
CGGTTCCGCG ACAGGGAGGA GCAGCGCTTC CGGGAGGAGA AGCTGCAACG AGCAGAGCTC
CAGGACAGCC TCCTAGATGA AGAACAGAGG CGACTCCAGG AGGAACGCCG AGAGCCAAAC
AGGAGCCGGC AACTGAGGGA                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876326 MGP_WTSI_3_93248484 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235194093 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876326 MGP_WTSI_3_93248484 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351869 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1132 bp downstream
Tssr961 transcription start site region 961 556 bp downstream
Tssr962 transcription start site region 962 561 bp upstream
Tssr963 transcription start site region 963 598 bp upstream
Tssr964 transcription start site region 964 694 bp upstream
Tssr30347 transcription start site region 30347 1089 bp downstream
Tssr30348 transcription start site region 30348 1069 bp downstream
Tssr30349 transcription start site region 30349 1057 bp downstream
Tssr30350 transcription start site region 30350 1013 bp downstream
Tssr30351 transcription start site region 30351 989 bp downstream
Tssr30352 transcription start site region 30352 939 bp downstream
Tssr30353 transcription start site region 30353 920 bp downstream
Tssr30354 transcription start site region 30354 905 bp downstream
Tssr30355 transcription start site region 30355 886 bp downstream
Tssr30356 transcription start site region 30356 832 bp downstream
Tssr30357 transcription start site region 30357 777 bp downstream
Tssr30358 transcription start site region 30358 659 bp downstream
Tssr30359 transcription start site region 30359 633 bp downstream
Tssr30360 transcription start site region 30360 603 bp downstream
Tssr30361 transcription start site region 30361 278 bp downstream
Tssr30362 transcription start site region 30362 262 bp downstream
Tssr30363 transcription start site region 30363 120 bp downstream
Tssr30364 transcription start site region 30364 48 bp downstream
Tssr30365 transcription start site region 30365 13 bp downstream
Tssr30366 transcription start site region 30366 30 bp upstream
Tssr30367 transcription start site region 30367 74 bp upstream
Tssr30368 transcription start site region 30368 91 bp upstream
Tssr30369 transcription start site region 30369 104 bp upstream
Tssr30370 transcription start site region 30370 111 bp upstream
Tssr30371 transcription start site region 30371 131 bp upstream
Tssr30372 transcription start site region 30372 144 bp upstream
Tssr30373 transcription start site region 30373 195 bp upstream
Tssr30374 transcription start site region 30374 213 bp upstream
Tssr30375 transcription start site region 30375 226 bp upstream
Tssr30376 transcription start site region 30376 252 bp upstream
Tssr30377 transcription start site region 30377 274 bp upstream
Tssr30378 transcription start site region 30378 307 bp upstream
Tssr30379 transcription start site region 30379 325 bp upstream
Tssr30380 transcription start site region 30380 405 bp upstream
Tssr30381 transcription start site region 30381 423 bp upstream
Tssr30382 transcription start site region 30382 482 bp upstream
Tssr30383 transcription start site region 30383 493 bp upstream
Tssr30384 transcription start site region 30384 502 bp upstream
Tssr30385 transcription start site region 30385 518 bp upstream
Tssr30386 transcription start site region 30386 539 bp upstream
Tssr30387 transcription start site region 30387 630 bp upstream
Tssr30388 transcription start site region 30388 656 bp upstream
Tssr30389 transcription start site region 30389 670 bp upstream
Tssr30390 transcription start site region 30390 742 bp upstream
Tssr30391 transcription start site region 30391 761 bp upstream
Tssr30392 transcription start site region 30392 779 bp upstream
Tssr30393 transcription start site region 30393 796 bp upstream
Tssr30394 transcription start site region 30394 816 bp upstream
Tssr30395 transcription start site region 30395 841 bp upstream
Tssr30396 transcription start site region 30396 890 bp upstream
Tssr30397 transcription start site region 30397 907 bp upstream
Tssr30398 transcription start site region 30398 982 bp upstream
Tssr30399 transcription start site region 30399 1029 bp upstream
Tssr30400 transcription start site region 30400 1514 bp upstream
Tssr30401 transcription start site region 30401 1534 bp upstream
Tssr30402 transcription start site region 30402 1633 bp upstream
Tssr30403 transcription start site region 30403 1673 bp upstream
Tssr34352 transcription start site region 34352 678 bp upstream
Tssr34353 transcription start site region 34353 672 bp upstream
Tssr34354 transcription start site region 34354 621 bp upstream
Tssr34355 transcription start site region 34355 524 bp upstream
Tssr34356 transcription start site region 34356 143 bp downstream
Tssr34357 transcription start site region 34357 188 bp downstream
Tssr34358 transcription start site region 34358 240 bp downstream
Tssr34359 transcription start site region 34359 309 bp downstream
Tssr34360 transcription start site region 34360 390 bp downstream
Tssr34361 transcription start site region 34361 411 bp downstream
Tssr34362 transcription start site region 34362 460 bp downstream
Tssr34363 transcription start site region 34363 487 bp downstream
Tssr34364 transcription start site region 34364 504 bp downstream
Tssr34365 transcription start site region 34365 518 bp downstream
Tssr34366 transcription start site region 34366 578 bp downstream
Tssr34367 transcription start site region 34367 711 bp downstream
Tssr34368 transcription start site region 34368 790 bp downstream
Tssr34369 transcription start site region 34369 815 bp downstream
Tssr34370 transcription start site region 34370 829 bp downstream
Tssr34371 transcription start site region 34371 883 bp downstream
Tssr34372 transcription start site region 34372 1646 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory