rs235200911 SNP Detail

Summary

• ID
  rs235200911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101294040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGAGCC ACGAAGTGGT
  GACCGCGGAG CAGCGGCGAG GCTCCGCGGG GAAAAAAAAA AAAAAAAAAG CGGCGCAACA
  AGTGCGGACT CCGCGGCTCG CGTCTCCTGC CTCCCTCCCG CCGCCCGGCC TCGCCTGGCT
  ACCCTCCGAG AAAGCCTTCG CCAACGCTGT TGGAGGGTGA GAAGAGGAAA GAGAAGGGGG
  R
  TGGGGTGGGA AGAGCGCGGC AGGTGGGGGG GGGTCATCTC GAACCTGTCC CGAGAGCAAA
  AGTTAAAATG GCACCAACCG GTATACTCCA CCTCCATTGC TACTGAGAAA TCTAAATGTC
  CAAACAGCAC TGCGGCTTGG CTTGCACGCT CTCCAAGCAG CCCAGCTAGA CTCGCCACCT
  TAAAACTAAA GGCCCCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404192014	MGP_WTSI_X_99445773	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235200911					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404192014	MGP_WTSI_X_99445773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101294040 () rs orientation: forward

Symbol	Name	Function Class
Cited1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	within coordinates
Cpgi22880	CpG island 22880	within coordinates
Rr8160	regulatory region 8160	within coordinates
Rr8931	regulatory region 8931	1440 bp distal
Tssr163910	transcription start site region 163910	344 bp downstream
Tssr163911	transcription start site region 163911	506 bp downstream
Tssr163912	transcription start site region 163912	1424 bp downstream
Tssr163913	transcription start site region 163913	1630 bp downstream
Tssr163914	transcription start site region 163914	1720 bp downstream
Tssr163915	transcription start site region 163915	1754 bp downstream