rs235208039 SNP Detail

Summary

• ID
  rs235208039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAACAAGGC AGGGTTCTTC TTTAAGAATT
  CTGAGGCTAG TTGAGGAAAC TCACACTGTA ATTAAGTCAT GAAGTTCACC AAGGGTATGG
  GATAGGGCAT TTCAGCATCT TTTTTTGTTt tttgttttgt ttgggacagg gtttctctgt
  R
  tagccctggc tgtcctggaa ctcactttgt agaccaggct ggcctcaaac tcagaaatcc
  gcctgcctct gcctcccgat cagcatcttt ttaaAATACT TTTTCTCTGG CCCGGAGTTG
  AACATGCTCG ATTCTCttta ttttattttg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068360	CHEV_1_154655874	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235208039					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684495 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1106 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	954 bp downstream
Tssr9424	transcription start site region 9424	918 bp downstream
Tssr9425	transcription start site region 9425	868 bp downstream
Tssr9426	transcription start site region 9426	846 bp downstream
Tssr9427	transcription start site region 9427	828 bp downstream
Tssr9428	transcription start site region 9428	810 bp downstream
Tssr9429	transcription start site region 9429	785 bp downstream
Tssr9430	transcription start site region 9430	1363 bp upstream
Tssr14234	transcription start site region 14234	431 bp upstream
Tssr14235	transcription start site region 14235	1180 bp downstream
Tssr14236	transcription start site region 14236	1865 bp downstream