rs235209063 SNP Detail

Summary

• ID
  rs235209063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGGCTC TGATGTATTC
  CTCTACCACC AGGCTCCCGA GGACATGGCC AAACTCATTT CTGCACCAGG GCAAATGGGG
  AGGGATGCCA GCCTTGCTGG CATCTAGCTG ATGAACAAAG TAGTCTCTGC TTCAATACTG
  ATTTGGTCCG CTGAGACCAG AGGATCACTC GTCCTGAACT CTGCTCCCTT CACGCTGATG
  R
  AGCCCCACGC TTCTGCTCTG AGGTCCCTCT TAGCTGCTGG GCTGAGCCTG CTTTTGGGCT
  TCAACCCTGG GAGGATAGCA GGTTTTAGTT ATGGAAGGCT GGGTTCAGTA GTAGCGAACT
  TGTCTCTATG TCAAGGCTGT GGATTGATCG TCCCTGCTGT TACTAGAATT GCGAGCCAGA
  CCCTGGGCTC TGAGAATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104750	CHEV_12_77355297	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235209063					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	577 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	988 bp upstream
Rr403350	regulatory region 403350	735 bp upstream
Rr468112	regulatory region 468112	498 bp proximal
Rr468113	regulatory region 468113	1417 bp proximal
Tssr113934	transcription start site region 113934	899 bp upstream
Tssr113935	transcription start site region 113935	934 bp upstream
Tssr113936	transcription start site region 113936	980 bp upstream
Tssr113937	transcription start site region 113937	1022 bp upstream
Tssr113938	transcription start site region 113938	1038 bp upstream
Tssr113939	transcription start site region 113939	1061 bp upstream
Tssr113940	transcription start site region 113940	1143 bp upstream
Tssr113941	transcription start site region 113941	1173 bp upstream
Tssr116711	transcription start site region 116711	736 bp downstream
Tssr116712	transcription start site region 116712	762 bp downstream