rs235212402 SNP Detail

Summary

• ID
  rs235212402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaagacag agacatagag agacagagaa
  acagagagat agacagagaa acagagagac aaagagagca agacagagac agacagagat
  agagaaagac agagacacac agagagacaa agagacagaa atacacagag agagagacag
  R
  aagatagaga cagagagata cagacaaaga gagacagaga cacagggaga cagagagaga
  cagagacaca cagagagaga caaagaggca gagaaacaga gacagaaaca gagagacaga
  ggcagagaca gacatacaga gaaacaggga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323821041	CHEV_11_96407219	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235212402					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436731 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	470 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1182 bp downstream
Tssr104544	transcription start site region 104544	510 bp downstream
Tssr104545	transcription start site region 104545	472 bp downstream
Tssr104546	transcription start site region 104546	456 bp downstream
Tssr104547	transcription start site region 104547	424 bp downstream
Tssr104548	transcription start site region 104548	324 bp downstream
Tssr104549	transcription start site region 104549	307 bp downstream
Tssr104550	transcription start site region 104550	256 bp downstream
Tssr104551	transcription start site region 104551	216 bp downstream
Tssr104552	transcription start site region 104552	208 bp downstream
Tssr104553	transcription start site region 104553	1122 bp upstream