rs235217460 SNP Detail

Summary

• ID
  rs235217460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATCATGGG TGGTTCATTT GTAACTTTGT
  CACAAGGTAG ATGGAAGTAG GACATAATAT TAAAATTGAA ATGAAACTAG AGAAGCAGCC
  TAGAAATGTT GAATCTAAGG AGAAACTGTG GCCAATGTAC GGTGCCTAAA ATTAGCCCAG
  Y
  TTAAGCTGAA GAGCTCTGAA TTTTATCTCA GAGTCATGAG CACTAAATGC CAAGACAGTG
  CAAATATACT ATTTAAAATA CTTCTGTgct ggagagacca ccccagcgtc aagagcattt
  actactactc ttgcatagac ccagattacc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458414	CHEV_10_109341885	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235217460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740690 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	111 bp proximal
Rr224236	regulatory region 224236	889 bp distal
Rr225672	regulatory region 225672	912 bp proximal
Tssr99236	transcription start site region 99236	1000 bp upstream
Tssr99237	transcription start site region 99237	984 bp upstream
Tssr99238	transcription start site region 99238	958 bp upstream
Tssr99239	transcription start site region 99239	929 bp upstream
Tssr99240	transcription start site region 99240	902 bp upstream
Tssr99241	transcription start site region 99241	863 bp upstream
Tssr99242	transcription start site region 99242	807 bp upstream