rs235218761 SNP Detail

Summary

• ID
  rs235218761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60733955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGAAGA ATAACAAAGT
  TTTTTTAAGT TTTAGGGAGC TTAGCCATAA ACATGACATG TGTGTCTGTC TAATGATTAT
  GCACACACAT TGTGATAACT AGTCTTTATG AATACAATTC CAAAAGGGAA TTGTTATCTT
  TAGAACGCAA TCTAAAAATG ATCAGAGAGG GGAAACCCTT CAAAATAAGA TCGCCACATG
  Y
  AAGAGTGAAC ACTGTTCTAG AACAGGAAAT CATTTGGTTA GAAACACTGA CCCTGCTTGA
  CGGTTCCCAT TGGGTGCTGT TTACAAGAAA TCTCCCCAGC AGGGCACCTG CGTCCAGTTT
  CCCAATCCTG TGGTTTGCTT ACGCTACAGG GCTGTGTTCC CGGCAAGTTC AAACCGTTAA
  GTTGAATTTC ATTCTTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354170022	MGP_WTSI_2_60741668	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235218761					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354170022	MGP_WTSI_2_60741668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60733955 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	1595 bp downstream
Gm74814	predicted gene, 74814	1747 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	51 bp downstream
Rr557735	regulatory region 557735	1758 bp distal
Rr557736	regulatory region 557736	1466 bp distal
Rr557737	regulatory region 557737	460 bp distal
Rr557738	regulatory region 557738	within coordinates
Rr557739	regulatory region 557739	528 bp proximal
Rr557740	regulatory region 557740	1658 bp proximal
Tssr17890	transcription start site region 17890	1644 bp downstream
Tssr24237	transcription start site region 24237	844 bp upstream
Tssr24238	transcription start site region 24238	771 bp upstream
Tssr24239	transcription start site region 24239	1763 bp downstream