rs235221769 SNP Detail

Summary

• ID
  rs235221769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61119687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAA AGGAGAAAAA
  CACTCAACAA AATCAAACGA CACGTTTTTT TTTGGACAAA AAATAATAAC ATTCAAGGTA
  ATAGTCTCAG TGTCCAACTT GGACTTACGT TGCTGCCTCT CCGTGCTTTT GGTCTCTCTG
  TGGCTATGTT TTGCCAGCAT GAGACCCTGT TCCCTCTGGA AGTTGCTAGG GGAGGAAGAG
  Y
  CATGCGTCCA GGGGTTTGGA GACAGCTTTA TCCTCTCGGC TTTTCTGAGG GTCGATGGGA
  GCAGAAGTGG AAGGGATGTT TAATCCAGAA CTTTCTGGTA TTCCCCTTTC GCCTACATGT
  GAGCTATATC CCGGGCTCTT CTCTCAAATC CTGCTGCCCA GGGACAAGTA CAGGGTAGAA
  GAGTGGCTCT CTTGTCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400872517	MGP_WTSI_18_61146269	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235221769					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400872517	MGP_WTSI_18_61146269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61119687 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Cpgi10101	CpG island 10101	1679 bp distal
Rr538733	regulatory region 538733	1038 bp proximal
Tssr151379	transcription start site region 151379	933 bp downstream
Tssr151380	transcription start site region 151380	862 bp downstream
Tssr151381	transcription start site region 151381	830 bp downstream
Tssr151382	transcription start site region 151382	718 bp downstream
Tssr151383	transcription start site region 151383	688 bp downstream
Tssr151384	transcription start site region 151384	646 bp downstream
Tssr151385	transcription start site region 151385	596 bp downstream
Tssr151386	transcription start site region 151386	544 bp downstream
Tssr151387	transcription start site region 151387	505 bp downstream
Tssr151388	transcription start site region 151388	481 bp downstream
Tssr151389	transcription start site region 151389	914 bp upstream
Tssr151390	transcription start site region 151390	1131 bp upstream
Tssr151391	transcription start site region 151391	1319 bp upstream