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rs235225060 SNP Detail
Summary
  • ID
    rs235225060
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93350888 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCTTTTCAT AGAGACCACA
TGACCCTGAG ACGATAGACC TGACCCTAGA ACTTCTGGAT CGCGACTGCA ACGGGCGTGT
TGATTTCAAC GAATTCCTCC TGTTCCTTTT CAAGATTGCT CAAGCTTGCT ATTATGCTCT
CGATCAGGCC GCAGAGCTAG GCGAGAAGAG AGCCCTGCCC AATGAAAAGA GGAACCTGTC
W
CAAGATCGCA GGCAAGAAGA CCAAAGGAGA TTCGAGCCCC GAAGCAGACA ACTGGACGAA
GAACCTGGGC GCCGAAGCTG GCAGAAGAGA CGTGAGCAGG AGGAGCGCGC TGAGGAGCAG
CGGCTGGAGC AGCGCTACAG GCAGCACCGC GATGAAGAGC AGAGACTGCA AAGGCGAGAA
CTGCAAGAAC TGGAGGAACG                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876309 MGP_WTSI_3_93247503 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235225060 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876309 MGP_WTSI_3_93247503 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350888 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 151 bp downstream
Tssr961 transcription start site region 961 422 bp upstream
Tssr962 transcription start site region 962 1542 bp upstream
Tssr963 transcription start site region 963 1579 bp upstream
Tssr964 transcription start site region 964 1675 bp upstream
Tssr30345 transcription start site region 30345 1192 bp downstream
Tssr30346 transcription start site region 30346 1167 bp downstream
Tssr30347 transcription start site region 30347 108 bp downstream
Tssr30348 transcription start site region 30348 88 bp downstream
Tssr30349 transcription start site region 30349 76 bp downstream
Tssr30350 transcription start site region 30350 32 bp downstream
Tssr30351 transcription start site region 30351 8 bp downstream
Tssr30352 transcription start site region 30352 37 bp upstream
Tssr30353 transcription start site region 30353 49 bp upstream
Tssr30354 transcription start site region 30354 67 bp upstream
Tssr30355 transcription start site region 30355 86 bp upstream
Tssr30356 transcription start site region 30356 99 bp upstream
Tssr30357 transcription start site region 30357 197 bp upstream
Tssr30358 transcription start site region 30358 312 bp upstream
Tssr30359 transcription start site region 30359 341 bp upstream
Tssr30360 transcription start site region 30360 371 bp upstream
Tssr30361 transcription start site region 30361 696 bp upstream
Tssr30362 transcription start site region 30362 710 bp upstream
Tssr30363 transcription start site region 30363 853 bp upstream
Tssr30364 transcription start site region 30364 924 bp upstream
Tssr30365 transcription start site region 30365 959 bp upstream
Tssr30366 transcription start site region 30366 1011 bp upstream
Tssr30367 transcription start site region 30367 1055 bp upstream
Tssr30368 transcription start site region 30368 1072 bp upstream
Tssr30369 transcription start site region 30369 1085 bp upstream
Tssr30370 transcription start site region 30370 1092 bp upstream
Tssr30371 transcription start site region 30371 1112 bp upstream
Tssr30372 transcription start site region 30372 1125 bp upstream
Tssr30373 transcription start site region 30373 1176 bp upstream
Tssr30374 transcription start site region 30374 1194 bp upstream
Tssr30375 transcription start site region 30375 1207 bp upstream
Tssr30376 transcription start site region 30376 1233 bp upstream
Tssr30377 transcription start site region 30377 1255 bp upstream
Tssr30378 transcription start site region 30378 1288 bp upstream
Tssr30379 transcription start site region 30379 1306 bp upstream
Tssr30380 transcription start site region 30380 1386 bp upstream
Tssr30381 transcription start site region 30381 1404 bp upstream
Tssr30382 transcription start site region 30382 1463 bp upstream
Tssr30383 transcription start site region 30383 1474 bp upstream
Tssr30384 transcription start site region 30384 1483 bp upstream
Tssr30385 transcription start site region 30385 1499 bp upstream
Tssr30386 transcription start site region 30386 1520 bp upstream
Tssr30387 transcription start site region 30387 1611 bp upstream
Tssr30388 transcription start site region 30388 1637 bp upstream
Tssr30389 transcription start site region 30389 1651 bp upstream
Tssr30390 transcription start site region 30390 1723 bp upstream
Tssr30391 transcription start site region 30391 1742 bp upstream
Tssr30392 transcription start site region 30392 1760 bp upstream
Tssr30393 transcription start site region 30393 1777 bp upstream
Tssr30394 transcription start site region 30394 1797 bp upstream
Tssr30395 transcription start site region 30395 1822 bp upstream
Tssr30396 transcription start site region 30396 1871 bp upstream
Tssr30397 transcription start site region 30397 1888 bp upstream
Tssr30398 transcription start site region 30398 1963 bp upstream
Tssr34352 transcription start site region 34352 283 bp downstream
Tssr34353 transcription start site region 34353 304 bp downstream
Tssr34354 transcription start site region 34354 314 bp downstream
Tssr34355 transcription start site region 34355 452 bp downstream
Tssr34356 transcription start site region 34356 1124 bp downstream
Tssr34357 transcription start site region 34357 1169 bp downstream
Tssr34358 transcription start site region 34358 1221 bp downstream
Tssr34359 transcription start site region 34359 1290 bp downstream
Tssr34360 transcription start site region 34360 1371 bp downstream
Tssr34361 transcription start site region 34361 1392 bp downstream
Tssr34362 transcription start site region 34362 1441 bp downstream
Tssr34363 transcription start site region 34363 1468 bp downstream
Tssr34364 transcription start site region 34364 1485 bp downstream
Tssr34365 transcription start site region 34365 1499 bp downstream
Tssr34366 transcription start site region 34366 1559 bp downstream
Tssr34367 transcription start site region 34367 1692 bp downstream
Tssr34368 transcription start site region 34368 1771 bp downstream
Tssr34369 transcription start site region 34369 1796 bp downstream
Tssr34370 transcription start site region 34370 1810 bp downstream
Tssr34371 transcription start site region 34371 1864 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory