rs235225090 SNP Detail

Summary

• ID
  rs235225090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30224181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCCGCGC CCCCCCCCTC
  CGCAGGCCGA GTGGTGCGGC CCGCCTCCAG CTGACCCGCC TGGAATCCCG GCTCGGAGCT
  CCGGACTCGC GCCCGCCTGC GCGCCCGCTC CCTCCCCCTC CCCCCGCCCC GCGCCCCCCG
  CCGCTGCCGC CGCCGCCTCC GCTTCCTCCG AGGGGGGCTC AGGCCCAGCC GCCGTCGCCT
  Y
  CGAGCTCCGC CGCCGCCGCC GCCGAGCACC ATGGGAGACG CCGGGAGCGA GCGCAGCAAA
  GCGCCCAGCC TGCCGCCTCG CTGTCCCTGC GGCTTCTGGG GGTAAGTGTG GGGGCAGGGG
  CGCGGGCTCG GGCCTCGGGG TGGCGGTGGG GACCCGAGGG AGGCCAGAGC CCCGGGAAGC
  TGGGCCGCGG AAGCCGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397979236	MGP_WTSI_17_30142152	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs235225090					SNP	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397979236	MGP_WTSI_17_30142152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30224181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	within coordinates
Gm50019	predicted gene, 50019	415 bp upstream
Rr525144	regulatory region 525144	972 bp distal
Rr525145	regulatory region 525145	464 bp distal
Rr525146	regulatory region 525146	133 bp distal
Rr525147	regulatory region 525147	within coordinates
Tssr143600	transcription start site region 143600	814 bp downstream
Tssr143601	transcription start site region 143601	688 bp downstream
Tssr143602	transcription start site region 143602	361 bp downstream
Tssr143603	transcription start site region 143603	331 bp downstream
Tssr143604	transcription start site region 143604	109 bp downstream
Tssr143605	transcription start site region 143605	572 bp upstream
Tssr143606	transcription start site region 143606	680 bp upstream
Tssr147242	transcription start site region 147242	567 bp upstream
Tssr147243	transcription start site region 147243	428 bp downstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates