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rs235226378 SNP Detail
Summary
  • ID
    rs235226378
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44126988 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCCCTCCT TCTTCTCCAT
TTTCTTTTCT TCCTTCCTCT CCAACTCTTT CCTCTTCTTC ATCTCTTCTT CCTCCTTTTC
ACCTCCTTTC TCCATCTTCC CTTGCTCCCT ATTTTTTCTA TCCTTCCATT TTCTTCCTTC
ATCTCTTCCA TCTTTTCTTC CTCTATCTTT CTTCTCCTCC CCTTCTATTT TTTCTCTTCT
R
TTTTCTCCTC ATCATCGTCC TATTTCATTT CCTCTTCCTC ATCCTTCATA CCTTCCTCCT
GTATCTCCTG TTCATCCTTC TACATTTCCT CTTCGTATCT ATTTCCTCCT CCTCCTCAAT
CTCCTACCTA TACTTCATCT CCTCTTTCTC TATCTCCTCC TACTCTTCTA CATCCCTTTA
CTTCTCCATC TCCTCCTCTG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156086 MGP_WTSI_7_51732934 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235226378 SNP A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156086 MGP_WTSI_7_51732934 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44126988 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 1905 bp distal
Tssr2222 transcription start site region 2222 1210 bp downstream
Tssr2223 transcription start site region 2223 1031 bp downstream
Tssr2224 transcription start site region 2224 185 bp downstream
Tssr2225 transcription start site region 2225 145 bp downstream
Tssr2226 transcription start site region 2226 374 bp upstream
Tssr2227 transcription start site region 2227 1447 bp upstream
Tssr66193 transcription start site region 66193 1953 bp downstream
Tssr66194 transcription start site region 66194 1861 bp downstream
Tssr66195 transcription start site region 66195 1810 bp downstream
Tssr66196 transcription start site region 66196 1777 bp downstream
Tssr66197 transcription start site region 66197 1632 bp downstream
Tssr66198 transcription start site region 66198 1601 bp downstream
Tssr66199 transcription start site region 66199 1591 bp downstream
Tssr66200 transcription start site region 66200 1568 bp downstream
Tssr66201 transcription start site region 66201 1550 bp downstream
Tssr66202 transcription start site region 66202 1535 bp downstream
Tssr66203 transcription start site region 66203 1513 bp downstream
Tssr66204 transcription start site region 66204 1457 bp downstream
Tssr66205 transcription start site region 66205 1433 bp downstream
Tssr66206 transcription start site region 66206 1420 bp downstream
Tssr66207 transcription start site region 66207 1400 bp downstream
Tssr66208 transcription start site region 66208 1386 bp downstream
Tssr66209 transcription start site region 66209 1355 bp downstream
Tssr66210 transcription start site region 66210 1322 bp downstream
Tssr66211 transcription start site region 66211 1282 bp downstream
Tssr66212 transcription start site region 66212 1239 bp downstream
Tssr66213 transcription start site region 66213 1224 bp downstream
Tssr66214 transcription start site region 66214 1192 bp downstream
Tssr66215 transcription start site region 66215 1162 bp downstream
Tssr66216 transcription start site region 66216 1115 bp downstream
Tssr66217 transcription start site region 66217 1043 bp downstream
Tssr66218 transcription start site region 66218 989 bp downstream
Tssr66219 transcription start site region 66219 947 bp downstream
Tssr66220 transcription start site region 66220 913 bp downstream
Tssr66221 transcription start site region 66221 894 bp downstream
Tssr66222 transcription start site region 66222 841 bp downstream
Tssr66223 transcription start site region 66223 774 bp downstream
Tssr66224 transcription start site region 66224 751 bp downstream
Tssr66225 transcription start site region 66225 731 bp downstream
Tssr66226 transcription start site region 66226 718 bp downstream
Tssr66227 transcription start site region 66227 677 bp downstream
Tssr66228 transcription start site region 66228 674 bp downstream
Tssr66229 transcription start site region 66229 661 bp downstream
Tssr66230 transcription start site region 66230 641 bp downstream
Tssr66231 transcription start site region 66231 606 bp downstream
Tssr66232 transcription start site region 66232 594 bp downstream
Tssr66233 transcription start site region 66233 572 bp downstream
Tssr66234 transcription start site region 66234 542 bp downstream
Tssr66235 transcription start site region 66235 522 bp downstream
Tssr66236 transcription start site region 66236 495 bp downstream
Tssr66237 transcription start site region 66237 474 bp downstream
Tssr66238 transcription start site region 66238 455 bp downstream
Tssr66239 transcription start site region 66239 404 bp downstream
Tssr66240 transcription start site region 66240 323 bp downstream
Tssr66241 transcription start site region 66241 311 bp downstream
Tssr66242 transcription start site region 66242 231 bp downstream
Tssr66243 transcription start site region 66243 217 bp downstream
Tssr66244 transcription start site region 66244 166 bp downstream
Tssr66245 transcription start site region 66245 104 bp downstream
Tssr66246 transcription start site region 66246 76 bp downstream
Tssr66247 transcription start site region 66247 29 bp downstream
Tssr66248 transcription start site region 66248 within coordinates
Tssr66249 transcription start site region 66249 14 bp upstream
Tssr66250 transcription start site region 66250 45 bp upstream
Tssr66251 transcription start site region 66251 55 bp upstream
Tssr66252 transcription start site region 66252 89 bp upstream
Tssr66253 transcription start site region 66253 112 bp upstream
Tssr66254 transcription start site region 66254 142 bp upstream
Tssr66255 transcription start site region 66255 202 bp upstream
Tssr66256 transcription start site region 66256 230 bp upstream
Tssr66257 transcription start site region 66257 266 bp upstream
Tssr66258 transcription start site region 66258 296 bp upstream
Tssr66259 transcription start site region 66259 325 bp upstream
Tssr66260 transcription start site region 66260 441 bp upstream
Tssr66261 transcription start site region 66261 467 bp upstream
Tssr66262 transcription start site region 66262 484 bp upstream
Tssr66263 transcription start site region 66263 490 bp upstream
Tssr66264 transcription start site region 66264 500 bp upstream
Tssr66265 transcription start site region 66265 529 bp upstream
Tssr66266 transcription start site region 66266 572 bp upstream
Tssr66267 transcription start site region 66267 600 bp upstream
Tssr66268 transcription start site region 66268 629 bp upstream
Tssr66269 transcription start site region 66269 649 bp upstream
Tssr66270 transcription start site region 66270 700 bp upstream
Tssr66271 transcription start site region 66271 718 bp upstream
Tssr66272 transcription start site region 66272 784 bp upstream
Tssr66273 transcription start site region 66273 796 bp upstream
Tssr66274 transcription start site region 66274 811 bp upstream
Tssr66275 transcription start site region 66275 819 bp upstream
Tssr66276 transcription start site region 66276 848 bp upstream
Tssr66277 transcription start site region 66277 856 bp upstream
Tssr66278 transcription start site region 66278 888 bp upstream
Tssr66279 transcription start site region 66279 935 bp upstream
Tssr66280 transcription start site region 66280 974 bp upstream
Tssr66281 transcription start site region 66281 1005 bp upstream
Tssr66282 transcription start site region 66282 1031 bp upstream
Tssr66283 transcription start site region 66283 1045 bp upstream
Tssr66284 transcription start site region 66284 1062 bp upstream
Tssr66285 transcription start site region 66285 1077 bp upstream
Tssr66286 transcription start site region 66286 1114 bp upstream
Tssr66287 transcription start site region 66287 1132 bp upstream
Tssr66288 transcription start site region 66288 1168 bp upstream
Tssr66289 transcription start site region 66289 1216 bp upstream
Tssr66290 transcription start site region 66290 1277 bp upstream
Tssr66291 transcription start site region 66291 1306 bp upstream
Tssr66292 transcription start site region 66292 1344 bp upstream
Tssr66293 transcription start site region 66293 1362 bp upstream
Tssr66294 transcription start site region 66294 1383 bp upstream
Tssr66295 transcription start site region 66295 1668 bp upstream
Tssr66296 transcription start site region 66296 1801 bp upstream
Tssr66297 transcription start site region 66297 1844 bp upstream
Tssr66298 transcription start site region 66298 1869 bp upstream
Tssr66299 transcription start site region 66299 1938 bp upstream
Tssr66300 transcription start site region 66300 1945 bp upstream
Tssr66301 transcription start site region 66301 1969 bp upstream
Tssr66302 transcription start site region 66302 1983 bp upstream
Tssr72198 transcription start site region 72198 1780 bp upstream
Tssr72199 transcription start site region 72199 81 bp upstream
Tssr72200 transcription start site region 72200 865 bp downstream
Tssr72201 transcription start site region 72201 1366 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory