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rs235226627 SNP Detail
Summary
  • ID
    rs235226627
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:107905022 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCATCTGTGT GTGTGCATGC
    ATGTGTGTAT ATGTGTGTCT GTATCTGTGT GTGTCTCTGT ATGTGTCTGT TTGTATCTGT
    GTATAAATGT GTCTGCCTGT ATCTGTGTGT ATGCATGTGT GCATGTCTGT GTACATGTGT
    GTCTGTGTAT ATGTGTGTCT GTATCTGTGT GTGTGTCTAT GTGTCTGCAC ATGTATGCCT
    R
    TCTGTATCTG TCTATGTGTC ATGTGTGTGC ATTGTGTGTG CATGTGCATG CGTGCATATA
    TGTGTATATA TGTGTCTGTG TATATGTGTG TCTGTATCTG TGTGTCTGTC TGAGTGTCTG
    TGTGTGTGGT GTGTGTCTGT ATCTGTGTGT CTGTCTGAGT GTCTGTGTGT CTGTGTCTGT
    GTGTGTGATG TGTGCGTGTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss387277526 MGP_WTSI_12_109176973 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235226627 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss387277526 MGP_WTSI_12_109176973 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:107905022 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bcl11b B cell leukemia/lymphoma 11B within coordinates
Rr387761 regulatory region 387761 433 bp downstream
Tssr117636 transcription start site region 117636 101 bp upstream
Tssr117637 transcription start site region 117637 72 bp upstream
Tssr117638 transcription start site region 117638 14 bp upstream
Tssr117639 transcription start site region 117639 within coordinates
Tssr117640 transcription start site region 117640 10 bp downstream
Tssr117641 transcription start site region 117641 30 bp downstream
Tssr117642 transcription start site region 117642 67 bp downstream
Tssr117643 transcription start site region 117643 185 bp downstream
Tssr117644 transcription start site region 117644 296 bp downstream
Tssr117645 transcription start site region 117645 327 bp downstream
Tssr117646 transcription start site region 117646 367 bp downstream
Tssr117647 transcription start site region 117647 383 bp downstream
Tssr117648 transcription start site region 117648 443 bp downstream
Tssr117649 transcription start site region 117649 469 bp downstream
Tssr117650 transcription start site region 117650 507 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory