rs235231677 SNP Detail

Summary

• ID
  rs235231677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCATGCA AAGAAGTTGT
  GAGTTGGCAC TATGAAGAGA GCCTATGAGA GACTAGTGGT GAAGCTTAGT TGTAGAGTAA
  GATCCCAATG TATTAGATGC CAGTGCAATG TGATGACCAC CAAGAATAGA AGCAACAGTG
  GAGTGGAGTG AACTAGAGCC TAGAGTTCTT CAAAGGGCAG AGCTGGAGAA GCTACCCAAG
  Y
  CCTTTGGAGG AGTCTAAAAT AACATGTTTG GATCTCAAAT AGTGGAACAA GAAGCTATGA
  AGTTGAAGTT ACCTTGAAGT CCCCAAGATG TTAGAGGTGT CAGAGCTGTG GAATACTTGC
  TAAGAAAAGC TGCTAATAGA AAGTGGAACA AGCCCAAGAA AGAATTGTGT TATAGTCAAC
  AAAGCTAAAA GGAGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084840	CHEV_4_35954441	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235231677					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007408 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	1401 bp upstream