rs235239777 SNP Detail

Summary

• ID
  rs235239777
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66882879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAAAGA AACAGGGTCT
  GTTCAGCAGT CTAAACAAAC ATCCAGACCT TTTTACACTT AAAAAAAAAA AAAAAGCTTG
  TAGCTAGGTT GTACTTGCCT GCTGAAATGG CATCCTTAAA GCACCTACGT TGACATAGGG
  TGCAACTCTA CAAGCTTCAA ACTGGCTAGC GGCTCCTATA AGGACACCTA TAAAAGCAAA
  M
  AAAAAAAAAA AAACAAAAAC AAAAACAAAA AAGGGAGATG AAACATGAGA TGTGAGGTAA
  ACATTTCTAA AATAATTTCC AAGGTGCCAA GTGGTAGCAA GTCATTTCTG GACTGTCATT
  TTTCTAAGTT ATTGTGATAG TTAAAATAAG TTGAAGTTTG CTTCTAAGTA GTAGAACTTT
  CATTAACTGC CCAGAAATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358267688	MGP_WTSI_3_66779468	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235239777					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358267688	MGP_WTSI_3_66779468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66882879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13239	CpG island 13239	1283 bp distal
Rr943	regulatory region 943	1140 bp distal
Rr577876	regulatory region 577876	745 bp distal
Shox2	SHOX homeobox 2	within coordinates
Tssr33491	transcription start site region 33491	1719 bp upstream