rs235250646 SNP Detail

Summary

• ID
  rs235250646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55909654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGTGGG GTTGTAAAGA
  GAAAGGCAAG TCGGCTAGGA ACAGCCAGAC GGCGCCCTGA GACCCCGCGC GTGGCCACCG
  AACTGGTGTT AGCGGCGAGC TGGAACGGAA CAAACTACTT GTCCCATCAT GCCTGGAGGC
  AGCTCTGTCC TTTGCATCCT AGGAGTTGTA GTTCTTCTGC CGCTCGCACT CAACGGCAGC
  Y
  TGAGTGTGTG GACTCTGTTA CCCAGAAGGC CTTGCACAGC GCCCGAAGCT AGAATTCCTT
  GGGTAGTCGA GTTTGCAATT AGCGGAACTC GTTCGAGTGG CCCTGAAGGC TCATCGAGGC
  TGCACGCGGC TAGTTGCTAA GCAAAAGAAT CTTTGGTCAA CTGCCACCTG AGTCAAAGCA
  ACAGGAAGTG AGTACCGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391161576	MGP_WTSI_14_56291034	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235250646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391161576	MGP_WTSI_14_56291034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55909654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	within coordinates
Gmpr2	guanosine monophosphate reductase 2	within coordinates
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	317 bp upstream
Rr492562	regulatory region 492562	84 bp distal
Rr492563	regulatory region 492563	142 bp distal
Rr492564	regulatory region 492564	within coordinates
Tssr125802	transcription start site region 125802	1045 bp downstream
Tssr125803	transcription start site region 125803	53 bp upstream
Tssr125804	transcription start site region 125804	111 bp upstream
Tssr125805	transcription start site region 125805	174 bp upstream
Tssr128855	transcription start site region 128855	328 bp upstream
Tssr128856	transcription start site region 128856	279 bp upstream
Tssr128857	transcription start site region 128857	72 bp upstream
Tssr128858	transcription start site region 128858	50 bp upstream
Tssr128859	transcription start site region 128859	18 bp upstream
Tssr128860	transcription start site region 128860	within coordinates