rs235251761 SNP Detail

Summary

• ID
  rs235251761
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85600890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGACCTTA ACAGTTTCCT
  CAAGTCCTAC CTAGAGACCT CTGGGGTGGG GGGTGGGGGT GGGGCGATGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTATCTTG GCTTTTTCCA GAATAGTCTA TCTGGAACCA
  GCTTTAGTTC CCTAGAGACA AAAAAAAAAA AAAAAAAAAA AAAAAAAGGG ATTTCTGCTT
  K
  CTCTTCTTCA TTGGAGAAGC AACTCCCTTC TAGTCTGCGT TCTTCCAAAA TCTTAACAGC
  AGCTGCTGCA GGCCGCAGGC CAGGCGGACA GATGCATCTA AGATTCCCCA CTTCAGTATC
  AAGTCCAAAG CGGCGGCGGG GGGGAACGGT GTGGGGGGAA GGAGGGTTGG GTGATGGGGT
  GGAAGGAAAC CGAGTTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397169248	MGP_WTSI_16_85804247	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235251761					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397169248	MGP_WTSI_16_85804247	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85600890 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	889 bp upstream
Cpgi8390	CpG island 8390	528 bp distal
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	64 bp distal
Rr518656	regulatory region 518656	399 bp distal
Rr518657	regulatory region 518657	602 bp proximal
Rr518658	regulatory region 518658	1475 bp proximal
Tssr141911	transcription start site region 141911	881 bp upstream
Tssr141912	transcription start site region 141912	41 bp upstream