rs235254516 SNP Detail

Summary

• ID
  rs235254516
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77107154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTAAGGG TTACGCCGCC
  GCGGCGGCGC GCGCCGAGGG GAGAGGCGGT TGCTGACAGG TGGCGCCTGC GCACTGGGAG
  CGCTCATTGT GCCCCGCAGC TGCCGAACCG CCCGCCTGCC CGCCCGCCGC CCGTTCGGCG
  CGTCAGTAGG CGAGAGAGTC CGGTGGTGGG TGCGGAGCCC GAGGCCGTTC CCGCGGCTTC
  W
  TCTCCCTCTC CGTTTCCCTC GTCCCTACGC CTCACCCATC GTCCCCCATC CCGGCTCCGT
  CACCCTCCCG CCCCCCACAC TCAGGACGAG AATGCCCTGC CCGGAACAAC CCAGCAGCAC
  CTAGATGGCT TTGGTCACGG TCCAGCGGTC GCCTACCCCC AGCACCACCT CCAGCCCTTG
  CGCCTCGGTG AGTCCCTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383936486	MGP_WTSI_11_77029830	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235254516					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383936486	MGP_WTSI_11_77029830	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77107154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3303	CpG island 3303	within coordinates
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	1830 bp downstream
Rr402750	regulatory region 402750	1283 bp downstream
Rr451639	regulatory region 451639	1532 bp distal
Rr451640	regulatory region 451640	1420 bp distal
Rr451641	regulatory region 451641	31 bp distal
Rr451642	regulatory region 451642	131 bp distal
Rr451643	regulatory region 451643	251 bp proximal
Ssh2	slingshot protein phosphatase 2	within coordinates
Tssr103125	transcription start site region 103125	150 bp downstream
Tssr103126	transcription start site region 103126	49 bp downstream