rs235254551 SNP Detail

Summary

• ID
  rs235254551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57016828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCTGC TCTGAGCCTG
  TCATGTCCTA ATTTTGTCAT GTCCTAACAT TTGGTTACAT TCCCCTTAAA AGTTAAGGCC
  AGAAATTGGG AAGCTTAGGC AGGAGGACTG AAAAGAGTTT GAGGTCAGCT CAGGCTACTG
  AGACCCTCAC ATCAGGAAAG AAAAGTAAAA AAAAGAAAGG TTAAAGTCAA TGTCAACAGG
  R
  CCTGCTCAGC AGTTACTATG TGTGACCTCT TCCCTGTGGA CCCATAGCAG GTGGCAAGCC
  AGGGGCATGT TAGGACTTGC CCCATACATG TGCTAGGCCC AGGCTCGGTT CTCAGGTGAG
  ATGGAGCAGT CTCTATCTCA GTGTACCCTA CCTGCCCTGT TGCAGGCTAG CCCCTTCCCC
  AAGGGCATGT CTCCCCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398562787	MGP_WTSI_17_56849251	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235254551					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398562787	MGP_WTSI_17_56849251	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57016828 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	within coordinates
Tssr145328	transcription start site region 145328	960 bp downstream
Tssr145329	transcription start site region 145329	78 bp upstream
Tssr145330	transcription start site region 145330	108 bp upstream
Tssr145331	transcription start site region 145331	153 bp upstream
Tssr145332	transcription start site region 145332	176 bp upstream
Tssr145333	transcription start site region 145333	200 bp upstream
Tssr145334	transcription start site region 145334	236 bp upstream
Tssr145335	transcription start site region 145335	1114 bp upstream
Tssr148830	transcription start site region 148830	12 bp downstream