rs235258557 SNP Detail

Summary

• ID
  rs235258557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72890868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTGGGC CACTCCTGTC
  TAACTGTACC ATGGGGTTTT GTTTTGTTTT GTTTTGTTTT TTTTTTATAT TACTATTCTC
  CTTCAGTTAC CATCAAATCA CCCTTGCTAC TACTGGCCCT AAAACTAAAT CACCTTTCTT
  GCCTCTCTTT TACATCTTGC TCCCTTTCCC TTCCTCCTTT CTCCACATGG TCATGGCTGG
  Y
  CTCTACTTCT CTACTCTCTC CTTCTCTCTG CCTTTCTCTG CTTCTACTAC TCTCTTAACT
  CCCCTCCACA AGCCCTAAAT AAACTCTATT CTACATTATA AACAAAACAA AACAAAACAA
  AACAAAAAGC CCTAAATCAC TGTAGTGGCT ATTCCTGGTT GTCAACTTGA CTATATTTGG
  AATGAACTAC AATCCAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378029959	MGP_WTSI_9_72831393	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235258557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378029959	MGP_WTSI_9_72831393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72890868 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	1843 bp upstream
Cpgi22024	CpG island 22024	1488 bp proximal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	within coordinates
Rr401512	regulatory region 401512	1735 bp upstream
Rr682882	regulatory region 682882	1657 bp distal
Rr682883	regulatory region 682883	356 bp distal
Rr682884	regulatory region 682884	1122 bp proximal
Rr682885	regulatory region 682885	1773 bp proximal
Tssr2935	transcription start site region 2935	1712 bp downstream
Tssr86066	transcription start site region 86066	1805 bp upstream
Tssr86067	transcription start site region 86067	1824 bp upstream
Tssr86068	transcription start site region 86068	1941 bp upstream
Tssr86069	transcription start site region 86069	1982 bp upstream
Tssr90501	transcription start site region 90501	1697 bp downstream
Tssr90502	transcription start site region 90502	1751 bp downstream
Tssr90503	transcription start site region 90503	1758 bp downstream