rs235265740 SNP Detail

Summary

• ID
  rs235265740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40285928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGTTT ACTCTGCTAA
  GGAATGAGCG CAGCTCTGAC CACCCGTGTG GGCCTAGAAT CACTGATGAC AAGAGAACAG
  TGTACCACAC GGTGGGACAG ACAAACCCCC CAAGAAAGCA AGGGCAAGGA TAGCTATAGG
  GCTGGGACTT CCTTGTCTCA AACTCAGAGA AGAGGCTTCA GCACAAGGAC CCAGCTCCCT
  R
  GCACCCAATG TTAAGAGAAG CAACTCAATG CTCAGCGGTC AGTCCCCGGT TGTCACCAGC
  TCAGGAGCTT GCAGTTATTA TGAGCTAATC TTGCAGAACT CAGATCCGCT CTCTCCGTCC
  TTCTCAAGGC CCTCTAAAGA ATGCTTGCAG CAGGAGAGCT ACACTTTGCT GGGGTTGGGT
  AGAAAACCAG TAGTGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377311549	MGP_WTSI_9_40182217	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235265740					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377311549	MGP_WTSI_9_40182217	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40285928 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	1319 bp proximal
Rr676806	regulatory region 676806	1625 bp proximal
Rr676807	regulatory region 676807	1676 bp proximal
Rr676808	regulatory region 676808	1779 bp proximal
Tssr88904	transcription start site region 88904	1489 bp downstream
Tssr88905	transcription start site region 88905	1581 bp downstream
Tssr88906	transcription start site region 88906	1700 bp downstream
Tssr88907	transcription start site region 88907	1727 bp downstream
Tssr88908	transcription start site region 88908	1794 bp downstream