rs235269563 SNP Detail

Summary

• ID
  rs235269563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107906367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCTAAG CTGTAACCTC
  CCTCCATGCC CTCAAGGCCA CATGTCCCTA GCCTAGAACA AGAGGCTGGT ACAGCTGTTG
  TTGGCTTACC AAAGAGCAGA TCTAACCAGC CAGTGAGCAT AGAGCTTCCA GAAAGTGTAG
  CCCACTGACC TCCAGTCTGG GGCCTCCCAG GTGCGCAGAG CATACTGTTG ATCCAAATAC
  K
  AGTGACCCAA ATAGTAGGGA AGCGCGGGCT ATAGACCATA GATGGCCATA CAAGGCCATG
  GGCTCAGTAA GCATGGAGAA GGCAGGACAT TGTGACAAGG CAGACCAGAA GGGACGTATG
  CCACCCCAGG TTCCCCAACA TAAGGCCGCC AAAGAACACT CAGTCCCTGG GCAGGTAGGT
  GGCCAGGGGT CTGTGCCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387277543	MGP_WTSI_12_109178318	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235269563					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387277543	MGP_WTSI_12_109178318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107906367 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1778 bp downstream
Tssr117636	transcription start site region 117636	1446 bp upstream
Tssr117637	transcription start site region 117637	1417 bp upstream
Tssr117638	transcription start site region 117638	1359 bp upstream
Tssr117639	transcription start site region 117639	1340 bp upstream
Tssr117640	transcription start site region 117640	1324 bp upstream
Tssr117641	transcription start site region 117641	1307 bp upstream
Tssr117642	transcription start site region 117642	1269 bp upstream
Tssr117643	transcription start site region 117643	1150 bp upstream
Tssr117644	transcription start site region 117644	1034 bp upstream
Tssr117645	transcription start site region 117645	985 bp upstream
Tssr117646	transcription start site region 117646	967 bp upstream
Tssr117647	transcription start site region 117647	955 bp upstream
Tssr117648	transcription start site region 117648	885 bp upstream
Tssr117649	transcription start site region 117649	859 bp upstream
Tssr117650	transcription start site region 117650	797 bp upstream