rs235271737 SNP Detail

Summary

• ID
  rs235271737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTGAAGG GATTCCTTTT CTGTTGTGGA AATGAAACAC
  CGTAACCAGA GCAATTTGTA GAAGGCAACA ATTTATTGTG GCTTAAGATT CCAGAGGGAT
  R
  AGAGTCCATC ATTGTGAGGA GCCAGGCAGC AGGTGGCAGA AAACCAGGAA GCTGAGACAC
  CACAGCTTGA AACACACATG CATGTGCAAG CAAGAACAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322575041	CHEV_8_35169935	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235271737					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20241	CpG island 20241			1234 bp proximal
Dctn6	dynactin 6			Intron
				Noncoding-Transcript-Variant
Rr400814	regulatory region 400814			1465 bp upstream
Rr661952	regulatory region 661952			22 bp proximal
Rr661953	regulatory region 661953			454 bp proximal
Rr661954	regulatory region 661954			961 bp proximal
Rr661955	regulatory region 661955			970 bp proximal
Rr661956	regulatory region 661956			1645 bp proximal
Tssr80889	transcription start site region 80889			881 bp downstream
Tssr80890	transcription start site region 80890			935 bp downstream
Tssr80891	transcription start site region 80891			1562 bp downstream
Tssr80892	transcription start site region 80892			1630 bp downstream
Tssr80893	transcription start site region 80893			1911 bp downstream