rs235273285 SNP Detail

Summary

• ID
  rs235273285
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58011356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCGTGC GTGGGCCAGC
  GCCTCCGGAA GCGCGCGCGG GCCCAACAGG AAAGCCCCCA GCATCACCCG CAGCCAGAGC
  GCCGCGGGGC CTGGGTACCA CGCGCCCTAA GGGAAACCGC CCACAGGCCC TGCAGCATCT
  CGCGAGATCT CGCCGGCTCG CCCCCAAGTA CTGCGAGTTT AGAACTTAAA AAAAGAAAAG
  M
  AAAAAGAAGC GAGAGGAGTC CAGAGGGTCC GTGCAGCCCG GGGGAGCATC AGCGGCGGTC
  CGTGCCAGAG CCGCGGCTAC CGGCGGGCGG GAGGACGCGG CGGCTGCGGC GGCGGAAGGG
  GCGGTGGCAG CGGCGGCGGC GGCGGCGGCG GCGCGCAGGT CGGCGCGGAG GCGCGTGCGG
  CCGCGCCTGC TCGCTGCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400788544	MGP_WTSI_18_58037938	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235273285					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400788544	MGP_WTSI_18_58037938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58011356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	within coordinates
Rr393751	regulatory region 393751	within coordinates
Rr538413	regulatory region 538413	within coordinates
Rr538414	regulatory region 538414	538 bp proximal
Rr538415	regulatory region 538415	1172 bp proximal
Rr538416	regulatory region 538416	1551 bp proximal
Slc12a2	solute carrier family 12, member 2	394 bp upstream
Tssr5332	transcription start site region 5332	7 bp upstream
Tssr151207	transcription start site region 151207	312 bp upstream
Tssr151208	transcription start site region 151208	336 bp upstream