rs235278858 SNP Detail

Summary

• ID
  rs235278858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTAAGG GTGGGGGCCC
  CTGAAGCTTG GGGGTTTCTG AAGTTAGGGG GCCCTTGAGC TGGAGCCAGG GTTAAGCTAG
  GTAGGGCACG GGGATTGAAG GAGAGACCGT GATGAGGGTG GAGGGACTCC AGGGGACTGC
  AGCCTGGCCT GTGCCTTGCA CCATGAATGT GCACAGGAAA GCCAGGGTGG TGGCACATGC
  Y
  TGAGATTCCA GCACCTTCCA GGTAGAGGCA GGAGGATTAG AAGTTTAAAG TTGTCCTCCC
  TTATGTAGTC AGTTCTAGGT CAGCCTGGGC TACATGAGAC CCTGGCTGGA AAAACTATTT
  TTCGAGCACC AAACTGAAAG GGGACACAAT GACTATCAAG ACCCTCAAAG CAGCGGGCCT
  TCAACCTCGC AGGGACCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318854	CHEV_4_130376318	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235278858					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547714 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1797 bp downstream
Tssr39266	transcription start site region 39266	1775 bp downstream
Tssr39267	transcription start site region 39267	1756 bp downstream
Tssr39268	transcription start site region 39268	1726 bp downstream
Tssr39269	transcription start site region 39269	1689 bp downstream
Tssr39270	transcription start site region 39270	1660 bp downstream
Tssr39271	transcription start site region 39271	1615 bp downstream
Tssr39272	transcription start site region 39272	1599 bp downstream
Tssr39273	transcription start site region 39273	1544 bp downstream
Tssr39274	transcription start site region 39274	1502 bp downstream
Tssr39275	transcription start site region 39275	1486 bp downstream
Tssr39276	transcription start site region 39276	1450 bp downstream
Tssr39277	transcription start site region 39277	1433 bp downstream
Tssr39278	transcription start site region 39278	1422 bp downstream
Tssr39279	transcription start site region 39279	1777 bp upstream
Tssr43599	transcription start site region 43599	1694 bp upstream
Tssr43600	transcription start site region 43600	1651 bp upstream
Tssr43601	transcription start site region 43601	1484 bp upstream