rs235283009 SNP Detail

Summary

• ID
  rs235283009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7460723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGCTG GCTCTCCGAA
  GTTCCCGGCG ACGCCTGTTC GGAAGACTGA CTCCGACAGA CTGACTGACT CAGCCGAGCT
  CCGCAGGGAG AGAAGGAGTG CGAGCGCGCA TGCGCACAAA GAGCCTGGAC GCGCGGGCGG
  CGGCCTCGGA GGCGCGCAGC GACGCAATGC GCAGGCGCAA GAACTGTCCC TCTGCGCTCC
  Y
  GCAGGAAAGG ACGCAGTGAC TGGGCCCGCG GGTGGGGCAG GCCTCTCGGG GGTGAGGGGT
  AGGGGGTGGG GGAATGGGGG AAAGCCTGAC GTAAGGGGCG TGGCTAAACT CTAGAACCGG
  CCCGCCACTG CAGCCCCTGC TACAGATTAA CCGTGCCCAG TCTCCCCACC TTCCACTTGT
  TTATGTGAAT GTTTTCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401693248	MGP_WTSI_19_7557848	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235283009					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401693248	MGP_WTSI_19_7557848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7460723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	167 bp distal
Rr543686	regulatory region 543686	within coordinates
Rtn3	reticulon 3	77 bp upstream
Tssr5428	transcription start site region 5428	374 bp upstream
Tssr5429	transcription start site region 5429	290 bp upstream
Tssr5430	transcription start site region 5430	194 bp upstream
Tssr5431	transcription start site region 5431	68 bp upstream
Tssr157986	transcription start site region 157986	1017 bp upstream
Tssr157987	transcription start site region 157987	235 bp upstream
Tssr157988	transcription start site region 157988	210 bp upstream
Tssr157989	transcription start site region 157989	148 bp upstream
Tssr157990	transcription start site region 157990	129 bp upstream
Tssr157991	transcription start site region 157991	79 bp upstream