rs235290138 SNP Detail

Summary

• ID
  rs235290138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131992769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAACCAGAG CCTCAGAGAC AGTCAATAAA
  CTTGCTTAAT TAAGCCACCA GTTTGGAGCA CAGGGTTCAA AACAAATTGC CTTCTGTTTC
  ACAGCAAATA GGAGGAAACA TAAGATACAG TATACTGTCT GCAAAAAAAA AAAAAAAAAA
  M
  AGAACTGCCT GAGTATTTCA AAGACTTTTA AATACGAATT AGGTGCATTG CTTCCATGTG
  GATATGCCAT AAGCTGTCCT GTAGATTCAG CAGCAAACTT CTGAAATAAA TTAGTATAAG
  TATGGGCCAG CAAGTGCTGA ACGGTGAGCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321693317	CHEV_5_132439800	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235290138					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131992769 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	within coordinates
Tssr53573	transcription start site region 53573	18 bp upstream
Tssr53574	transcription start site region 53574	794 bp downstream