rs235300154 SNP Detail

Summary

• ID
  rs235300154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51371888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAAAAT GAGATGTGTA
  TGACTGAAGA AAGTGGTGTG GAAAATTAAA CAGAAAATAC TTAGTGTTTG AGGCACACAG
  GGCTGTTGTG AATCCTAAGA GAAGACTCTG CTAAGTTAAT TCTGAGGATA ACCCTAAATG
  GAGAGGTCCA CACAGACATC TAATGAACTA GTGCACATAG GCAGAAAATA CAGCAGATAC
  R
  TTCCTCAGAC ATGAAAATGG GAATCAGTGT GACAATAAAA GGCTGGAACT ATGAGAAGGA
  AGCTTCCAGA CTCCCCAAGT TCTACAGGCC ACAGCAGAAA TGATATAATG TGATAAAGTT
  CCAAAAGGAT CTCTCTCACT GAAAGAGATA CTGGATGGAA CCAGGAGTCA CTTTATCCAC
  CTCATTGTCT CCTTGCTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379869	MGP_WTSI_10_51215598	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235300154					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379869	MGP_WTSI_10_51215598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51371888 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93275	transcription start site region 93275	1941 bp downstream
Tssr93276	transcription start site region 93276	1887 bp downstream
Tssr93277	transcription start site region 93277	1839 bp downstream
Tssr93278	transcription start site region 93278	1803 bp downstream
Tssr93279	transcription start site region 93279	1647 bp downstream
Tssr93280	transcription start site region 93280	1200 bp downstream
Tssr93281	transcription start site region 93281	1152 bp downstream
Tssr93282	transcription start site region 93282	1134 bp downstream
Tssr93283	transcription start site region 93283	1044 bp downstream
Tssr93284	transcription start site region 93284	676 bp downstream
Tssr93285	transcription start site region 93285	492 bp downstream
Tssr93286	transcription start site region 93286	389 bp downstream
Tssr93287	transcription start site region 93287	5 bp downstream
Tssr93288	transcription start site region 93288	225 bp upstream
Tssr93289	transcription start site region 93289	293 bp upstream
Tssr97556	transcription start site region 97556	1281 bp upstream
Tssr97557	transcription start site region 97557	944 bp upstream
Tssr97558	transcription start site region 97558	229 bp downstream
Tssr97559	transcription start site region 97559	699 bp downstream
Tssr97560	transcription start site region 97560	795 bp downstream