rs235302640 SNP Detail

Summary

• ID
  rs235302640
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAAACT CAGAAATTTA
  CCTGCCTCTG CCTTCCAAGT GCTGGGATTA AAGGTGTGCA CCATCACTGC CCCGCTCAGG
  TTCAACTCTT TTTTTTTATT TTCTGAGACA GTGTTTCTCT GTATAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCCGCCTGTC TCTGCCTCCG
  S
  AGTGCTGGGA TTAAAGGCGT GCACCACCAC ACCCGGCCAG ATTCAACTCT TTTAAGACTT
  TTTGTTTTGC TAAAAAAGCA ATAGTGCTTC GATTATACCT TTGAATCTCT TCCCCCTCCC
  TTTTGTTGTT GTTTTGTTTT CTGTTTGTAT GTCTTTTGTT TTTTGAGACA GGGTCTCAAT
  ATGAAGCTCT GGGTGTTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379486927	MGP_WTSI_10_13271045	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235302640					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379486927	MGP_WTSI_10_13271045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426983 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1668 bp upstream
Cpgi1315	CpG island 1315	1612 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1700 bp upstream
Rr427802	regulatory region 427802	1328 bp proximal
Rr427803	regulatory region 427803	1589 bp proximal
Rr427804	regulatory region 427804	1666 bp proximal
Rr427805	regulatory region 427805	1871 bp proximal
Tssr92399	transcription start site region 92399	1948 bp upstream
Tssr96771	transcription start site region 96771	1616 bp downstream
Tssr96772	transcription start site region 96772	1760 bp downstream
Tssr96773	transcription start site region 96773	1824 bp downstream
Tssr96774	transcription start site region 96774	1872 bp downstream
Tssr96775	transcription start site region 96775	1901 bp downstream
Tssr96776	transcription start site region 96776	1916 bp downstream