rs235303197 SNP Detail

Summary

• ID
  rs235303197
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72762202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGGCTG GCTGGGCTGT
  CCAGTATTAT GGGCATGACT CAGCCCAAGC AGAGGTTAAC AAGCAGAGCT CAGCACAGTG
  GCTACAGCAG TAGTGTTGCT GCTCAGGGTC AAGGCTGTCA GAACCCCAGG CACGTCGGGT
  TAGTTACTGA CAGGCTTGGC AAGCAACCTG CCTAGTTGCC TCCCTCCCTC CCAGGGATAG
  S
  GATACCTGGC CTCTGCCATA GAAGCCTGAC AACCTTTCTC ACCCCCACCC CTGATGTCCT
  ACCCCCAGTG TAGCCACCCT TCCACCCAGA TCCCAGCTAC TTTATGAGGT GGGCTAGGGC
  CAGGGATGCC TGGCAGACAC TGAGAAAGGC TACTTTAAAC CAGTGTAAAC TTTATTCTCT
  GACAGCCCCT CCCCTTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403774857	MGP_WTSI_X_70963935	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235303197					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403774857	MGP_WTSI_X_70963935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72762202 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Cpgi22777	CpG island 22777	1978 bp distal
Cpgi22778	CpG island 22778	1181 bp distal
Gm61833	predicted gene, 61833	757 bp upstream
Rr406105	regulatory region 406105	1895 bp downstream
Rr691931	regulatory region 691931	1846 bp distal
Rr691932	regulatory region 691932	within coordinates
Tssr161281	transcription start site region 161281	1978 bp downstream
Tssr161282	transcription start site region 161282	1846 bp downstream
Tssr161283	transcription start site region 161283	1817 bp downstream
Tssr161284	transcription start site region 161284	1797 bp downstream
Tssr161285	transcription start site region 161285	1532 bp downstream
Tssr163565	transcription start site region 163565	754 bp upstream
Tssr163566	transcription start site region 163566	732 bp upstream