rs235304749 SNP Detail

Summary

• ID
  rs235304749
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34504434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAGCCT CCAACTGAAA
  TGTTTTTAAC CCTTTATTTT TATCACTATG GTTAAGAAGA TTCAGAAAAC AAGGATGAAA
  CCCACCAACT TAGTTATAAT ATAAAACAGA ATTCATTAAT GGAGATATAC AATTCTGATT
  TGAACAGAAA TTAAGTTATA AAATAAATAT CAGTAGATCC TAATCTTAGG ATACATTTTT
  W
  AAATTTAATT ACATGAATAA TTTATATTAC AAAGGAGTTT TGTTATGAAG GTATTTTATA
  AGATTTGTTA CAGTGTTTCC AAATTTGCTT TTGATATTTG GCCCTTGGGC TCAGACAGAT
  GGCTCAGCGG TTAAGAGGGC TGGCTGCACT TCCAGAGGGG CCAAAATTGA TTCCCAGAAC
  CCTGTGATGA CTCACAACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400238209	MGP_WTSI_18_34531035	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235304749					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400238209	MGP_WTSI_18_34531035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34504434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	1043 bp proximal
Reep5	receptor accessory protein 5	within coordinates
Rr352680	regulatory region 352680	166 bp proximal
Tssr152789	transcription start site region 152789	339 bp upstream
Tssr152790	transcription start site region 152790	461 bp downstream
Tssr152791	transcription start site region 152791	583 bp downstream
Tssr152792	transcription start site region 152792	664 bp downstream
Tssr152793	transcription start site region 152793	1063 bp downstream
Tssr152794	transcription start site region 152794	1110 bp downstream
Tssr152795	transcription start site region 152795	1120 bp downstream
Tssr152796	transcription start site region 152796	1917 bp downstream
Tssr152797	transcription start site region 152797	1932 bp downstream