rs235307263 SNP Detail

Summary

• ID
  rs235307263
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110810248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAACCGT CTAAGGGCTG
  GTGAGATGGC TCAGTGGTTA AGAGCACTGA CTGCTCTTCT GAAGGTCCTG TGTTCAAATC
  CCAGCAACCA CATGGTGGCT TACAACCATC CATAATGAGA TCTGACACCC TCTTCTGGTG
  TGTCTGAAGA CAGCTACAGT GTAATTACAT ATAATAAATA AATAAATCTT AAAAAAAAAA
  C
  AAAAACAAAA ACCGCCGGGC ACCACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG
  TGGATTTCTG AGTTTGAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGGCT
  ACACAGAGAA ACCCTGTCTC GAAAAACCAA AAACCAAACC AAAACAAAAA ACAACAACAA
  CGACAACAAA AAAAACCCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
ss378915075	MGP_WTSI_9_110883684	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
rs235307263					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378915075	MGP_WTSI_9_110883684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110810248 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr192791	regulatory region 192791	1848 bp distal
Rr207418	regulatory region 207418	1753 bp proximal