rs235307584 SNP Detail

Summary

• ID
  rs235307584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47258493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCTGC TCCCAAGTCT
  GGCTGAGCTG TGGCCATCTG CACCATTAAG CTAGATTGTG AAGCTGTGCC TTGGATTTTC
  CAATAGCTGA GCCTGTCGGG TAGACTGATG CATGCACTCT GACTGACACA ATGCTTCTTC
  GCCCCGCTCT GCCTCTACTC AAATGAGGCT TCTTACCACC CTCCTTGGGT CAGAATCAGT
  Y
  CCCAAAACCG AGAGAGCTGC GGGCTCCCGT TCTAACTTTC AGTTCAGTTT TCTCATTTTT
  AAACTACTTT CTCCAACAGC AACAACTTTC ACGGCAAAGA AAAGCACTCC CACAAGAACC
  CTTATGGGGG AGGGGCGGGG GAGGGAATCA GCAGCTACAC ACAGCCGAGA ATATGGAAAT
  GAAAACATTT CCAGGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388517775	MGP_WTSI_13_47200385	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235307584					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388517775	MGP_WTSI_13_47200385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47258493 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	1329 bp upstream
Cpgi5551	CpG island 5551	301 bp proximal
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	1163 bp proximal
Rr479040	regulatory region 479040	1420 bp proximal
Tssr119626	transcription start site region 119626	555 bp upstream
Tssr119627	transcription start site region 119627	1384 bp upstream
Tssr119628	transcription start site region 119628	1396 bp upstream
Tssr122369	transcription start site region 122369	357 bp downstream
Tssr122370	transcription start site region 122370	504 bp downstream
Tssr122371	transcription start site region 122371	591 bp downstream
Tssr122372	transcription start site region 122372	667 bp downstream
Tssr122373	transcription start site region 122373	716 bp downstream
Tssr122374	transcription start site region 122374	773 bp downstream
Tssr122375	transcription start site region 122375	1084 bp downstream
Tssr122376	transcription start site region 122376	1102 bp downstream
Tssr122377	transcription start site region 122377	1127 bp downstream
Tssr122378	transcription start site region 122378	1159 bp downstream
Tssr122379	transcription start site region 122379	1192 bp downstream
Tssr122380	transcription start site region 122380	1205 bp downstream