rs235310194 SNP Detail

Summary

• ID
  rs235310194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCACTG CAACACTTAG
  GAGGCTGTGA TAGGATTTCT GCATGTTGTA GTGCAGCCTG GGCTACAAAG GAGCCTGTCC
  CAAGCAATAT ACAAGGTCAG TTATATTTGA ACTTTAATAT TATTTGAACT GTCCAGCTCT
  GGGTAGAGAG AAGCAAGCAA GGAAGCAAGA AACCCTTTTC AGAGGGGGAT TCTTCCAGTG
  K
  AGGTGATGCG TATGTGATAA GAGACAGACA GACACCTTAG TTATGTTGGA TTGTGGAACT
  CACTGGCAGC GGAAACATGA CATGCCAGTA AGTCCAGTGG AGACAGGGAT TTAATTTTGA
  CTTTTGAATG TTTTCACTAC TACTGTATAC CCAGGCTCTA AAATAGCACT TGGCTTATGA
  TCAATATTCA GTAAATACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107360	CHEV_9_96158400	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235310194					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140034 () rs orientation: forward

Symbol	Name	Function Class
Rr684927	regulatory region 684927	334 bp proximal
Rr684928	regulatory region 684928	772 bp proximal
Rr684929	regulatory region 684929	1025 bp proximal
Rr684930	regulatory region 684930	1315 bp proximal
Rr684931	regulatory region 684931	1804 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1239 bp upstream
Tssr86589	transcription start site region 86589	716 bp upstream
Tssr86590	transcription start site region 86590	733 bp upstream
Tssr86591	transcription start site region 86591	747 bp upstream
Tssr86592	transcription start site region 86592	810 bp upstream
Tssr86593	transcription start site region 86593	825 bp upstream
Tssr86594	transcription start site region 86594	1027 bp upstream
Tssr86595	transcription start site region 86595	1265 bp upstream
Tssr86596	transcription start site region 86596	1289 bp upstream