rs235323386 SNP Detail

Summary

• ID
  rs235323386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATATTA CATATGCAAC
  ATGCTTTTGT AGACTATAAT AATAATAATA TTTATGAAAA TAATGCCAAC CATTTACTCC
  ATTGCTTGGC TTCTACTGGT CTACAGACTG TATCGATTGA CATTGGTGTT ATGTTTATAA
  AAAGATAAAG AGAAGGGGGG TATGTTCTAT GGAGGTGTAG TCAGGTATGG GGGAAGGGGG
  Y
  TCCTTGGTGG GCCCATGCTG GGGGCCCATC CCTTCCCCCT GAGGGACCAG CCACATGATG
  GTATAGTATA GAATGGAGTT TATTTAGGAC ATAGGGAGGG GAGTTAAGAG GGTAGTAGAG
  GCAGAGAAAG GCAGGAGGGG GAGGGGAGGG GAGGGAGATG AGTAGAGGCT GACAAGAGGG
  AATGGGGAGA GAGGGGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957601	CHEV_3_127564908	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235323386					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655639 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1194 bp downstream
Rr584887	regulatory region 584887	300 bp distal
Rr584888	regulatory region 584888	523 bp proximal
Tssr31614	transcription start site region 31614	375 bp downstream