rs235336452 SNP Detail

Summary

• ID
  rs235336452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113619163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCAGC ATTTAGCAAG
  TCTTAAAGGG TCATCCACGT TGTAGTCAAT GTGAGTTCTG TATCCCCTTC CTTCCTTCCG
  TCCCCTCCCT CATGTCTCTC TTCCACCCCT TCAGTTTCTC TCATTTACTC TCCTCCCTCC
  TTTTCCAGTG ATGAAAACAG AACCCAGGGT CTCTCACATG CAGGGCTGTG CTCCTTGTTC
  Y
  AGTATCTCTG CCTCTCTGTC TCTGTCTGTC TCTCTGTCTC TGTCTCTCTG TCTCTCTCTA
  ACTTTTGGGT TTTCGAGACA GGGTTTCTCT GTGTAGTTCT GGCTGTCCTG GAACTCCCTC
  TATAGACCAG GCTGGTCTCG AACTCAAAGG TCCACCTGCC TCTGCCTCCT ATGGGCTGGG
  ATTAAAGGCA TGCACCATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911287	CHEV_6_113592196	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235336452					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113619163 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	642 bp upstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates