rs235354627 SNP Detail

Summary

• ID
  rs235354627
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153615037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCACAGC AGAGTCCAAT
  AAATGGGTAA TGCTAAGGCC TGCTCAGCTC CAGAAGTAGA CACTTGCAAA GGTCTACACA
  ACTCTAGAAC ATCCTTGAAG ACCCTCTGGG CGTGGGGTGG GGTCTCTGTG TGCAGCATAA
  CTGCTCTGCT CTTCTCTCAG TTCGTTTCTG AGAATTATCC CTAGCATGCC TGCTACCCCT
  M
  CAGAATGCTC CCTGGGGAAG TCCAGCTCTC CAAAAAGGTC TTCAGTCCCC ACCACACCTT
  ATGAAATAAG TATGGTGATG TCTAAACCCC AGACACAAAG AAATGGAAAG ATGGAGTCTC
  TAAGGTCTCT CATAATTATA CAGCAGAAAC ATGATTTGAA ACTCCATAAC TATCTACCCT
  TAACCTTACC TGCTGCTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351979774	MGP_WTSI_1_155586421	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235354627					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351979774	MGP_WTSI_1_155586421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153615037 () rs orientation: forward

Symbol	Name	Function Class
C230024C17Rik	RIKEN cDNA C230024C17 gene	1462 bp upstream
Cpgi870	CpG island 870	872 bp proximal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	1062 bp upstream
Rr420740	regulatory region 420740	1473 bp distal
Rr420741	regulatory region 420741	1079 bp distal
Rr420742	regulatory region 420742	281 bp proximal
Rr420743	regulatory region 420743	919 bp proximal
Tssr9477	transcription start site region 9477	1053 bp upstream
Tssr9478	transcription start site region 9478	1244 bp upstream