rs235357458 SNP Detail

Summary

• ID
  rs235357458
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAGATA CATTATAAAT
  CCAACTTGTC CAAAGTTGAC TGAATTTCTC ATGCAACTCT TCATCACTTA ATTCCTTACC
  CTTCAAATTG AAAGCTAATT TTCTGCTCCT CTCTAACAAC TGATTTTCAT ATTGTGACTT
  TCGGTTATCA AGTATTTCTT GGCTTTTTTT AAGACTGATA TGTTCATTGC ATTTCCGTCT
  D
  GTGTCTGAAA TAAGTGTGTC TTTAAGGATT TGTAGCTTGT GTTCAAAATT TGTTTTCCAC
  TGAAACAATA TTTCACTATC TGGGTCTTTT TCAAAATATT TGTCAAATTG TTCTTTGATG
  GTTTCATATT TCTTGCTAAG TGGATCCTCC AGTAAATTAG ATGTGAGTGT CAGGATTTTA
  CCATTTTGAA TCTGAATGTT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372628543	MGP_WTSI_7_113649654	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235357458					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372628543	MGP_WTSI_7_113649654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105347 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74124	transcription start site region 74124	1994 bp upstream
Tssr74125	transcription start site region 74125	1983 bp upstream
Tssr74126	transcription start site region 74126	1947 bp upstream
Tssr74127	transcription start site region 74127	1796 bp upstream
Tssr74128	transcription start site region 74128	1716 bp upstream
Tssr74129	transcription start site region 74129	1185 bp upstream
Tssr74130	transcription start site region 74130	1136 bp upstream
Tssr74131	transcription start site region 74131	925 bp upstream
Tssr74132	transcription start site region 74132	749 bp upstream
Tssr74133	transcription start site region 74133	92 bp upstream
Tssr74134	transcription start site region 74134	127 bp downstream
Tssr74135	transcription start site region 74135	210 bp downstream
Tssr74136	transcription start site region 74136	278 bp downstream
Tssr74137	transcription start site region 74137	344 bp downstream
Tssr74138	transcription start site region 74138	374 bp downstream
Tssr74139	transcription start site region 74139	408 bp downstream
Tssr74140	transcription start site region 74140	463 bp downstream
Tssr74141	transcription start site region 74141	863 bp downstream
Tssr74142	transcription start site region 74142	1006 bp downstream