rs235358934 SNP Detail

Summary

• ID
  rs235358934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130555193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTAGA AAATGGGGCA
  CCATTTCTGG TAGGTTGGGT CCTGAAGCCT GGCCACCTAG AGATGCTCTG GCCCCTCTCT
  CCTGCCTCCC TCCCCACACT TCACTCTTTT CACTGAAGGT TCTCTAATGT CTCCTCTGCG
  CCTGGCCTGT GCTTGGACCT GGGAGCCAGG AGGGGCTGGG GAGATGGGTC AGCGGATAAA
  R
  CACTCCGTCA CACAAGTGTG AGGACCGTGG TTCGAACCCT AGGAACTCAT AAAGCCAGGT
  GTGGTAGCTC TTGTGTGTAG TCTCCACATT TATACAATGG AATGCACAGA GATGGAAGTC
  TCTGGATTCT TGCAGGTGAG CTAGCCTGGG ATACTTAGTA GTGAACAAGG CACCCTGCCA
  AGCAAGACAA GGCAAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318891	CHEV_4_130383797	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235358934					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130555193 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1569 bp upstream
Gm42316	predicted gene, 42316	1792 bp downstream
Gm69250	predicted gene, 69250	1071 bp upstream
Rr600596	regulatory region 600596	763 bp proximal
Rr600597	regulatory region 600597	1082 bp proximal
Sdc3	syndecan 3	1564 bp downstream
Tssr39294	transcription start site region 39294	1844 bp downstream
Tssr39295	transcription start site region 39295	1679 bp downstream
Tssr39296	transcription start site region 39296	1651 bp downstream