rs235362039 SNP Detail

Summary

• ID
  rs235362039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118265687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGCTGCA CAACTATGCT
  TCTTTTAATA GTGGCACCTC AGTTTCCTGA AAAGAGGGAT GATAATGGTG TTTGCCTTAT
  AGGGTTGAAA GAACTGGTAA CAGTAAAGAG CTCAGAATTG TGGCTGGCAT ACAGTAAGAA
  TTCGACAAGT AGCCATTGCT ATTTGTATCG TTACGCACAT GCATCAACCT TCCCTCCTAC
  R
  AGGCTATCCC TCTGGGGTCC TGGACACGCT AGCCAAATTT GGTACCTCCT CGGATCCGCT
  CGTTCAGTTG GAAGGAGTAG TCCTAAGGTA TCTTTGCATG GCATGACACC TCACCTGCTC
  TGACTTCAGT TGTCTGCTCT GTACATGACA ATAAATACTG CCAGATTCCC TGCTGGAGTC
  TGAATGTCAA AACATACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321283062	CHEV_4_118081095	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235362039					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118265687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	390 bp proximal
Med8	mediator complex subunit 8	847 bp upstream
Rr398422	regulatory region 398422	670 bp upstream
Rr598388	regulatory region 598388	310 bp proximal
Rr598389	regulatory region 598389	773 bp proximal
Rr598390	regulatory region 598390	887 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	895 bp upstream
Tssr38654	transcription start site region 38654	841 bp upstream
Tssr43049	transcription start site region 43049	729 bp downstream