rs235366594 SNP Detail

Summary

• ID
  rs235366594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51448541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAAAAAA AGCCAGAAAA
  TAGGACTGGG ACATCTTAAT GTGTTCCTTT TTTTATACCG TGATTGAACA GGGAGGGCCT
  CTGAAAAAAT AAGGATGGAA TTATATGAGC TCCTTGGAGT ATTCAGAAAT CTAAAGAAAA
  AGATCTTATG GTAATTTGCT AACAAAAGAT AGTCATTTCC TTTCATCCAA AATAAACACT
  R
  AAATTGTTAA AATTCTATAT GGATTGGGAA AGTAACAATC CTCACCATGT AAAGTTGTCT
  GAGGTACCAG TGTTTTAGTA AGATTATTTT CACTAACATA CTGAAATTAT TAGTAACATA
  CTAATAACAC GGGAACTCAA CTGTTTTCCT GCATTTTTAC CCGAAATTTA CATGTTGAAA
  TCCACACAAA ACTTGTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292377	MGP_WTSI_6_51421560	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235366594					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292377	MGP_WTSI_6_51421560	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51448541 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	within coordinates
Cpgi17402	CpG island 17402	170 bp distal
Gm67572	predicted gene, 67572	1510 bp downstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	1667 bp upstream
Rr379347	regulatory region 379347	within coordinates
Rr630214	regulatory region 630214	856 bp distal
Rr630215	regulatory region 630215	53 bp distal
Rr630216	regulatory region 630216	338 bp proximal
Tssr56444	transcription start site region 56444	1344 bp downstream
Tssr56445	transcription start site region 56445	1211 bp downstream
Tssr56446	transcription start site region 56446	1145 bp downstream
Tssr56447	transcription start site region 56447	1131 bp downstream
Tssr56448	transcription start site region 56448	1083 bp downstream
Tssr56449	transcription start site region 56449	1064 bp downstream
Tssr56450	transcription start site region 56450	1033 bp downstream
Tssr56451	transcription start site region 56451	1000 bp downstream
Tssr56452	transcription start site region 56452	941 bp downstream
Tssr56453	transcription start site region 56453	888 bp downstream
Tssr60947	transcription start site region 60947	1707 bp upstream
Tssr60948	transcription start site region 60948	1684 bp upstream
Tssr60949	transcription start site region 60949	492 bp upstream